PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc07487.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 296aa    MW: 32403.2 Da    PI: 9.2261
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc07487.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF961.6e-30240290151
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                   krien++ rqvtf+kRrng+lKKA+ELSvLCd+eva+i+fss+g+lyeys+
  Zmw_sc07487.1.g00010.1.am.mk 240 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCDVEVALIVFSSRGRLYEYSN 290
                                   79***********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-40232291IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-28232292IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.927232292IPR002100Transcription factor, MADS-box
CDDcd002651.62E-39233296No hitNo description
PROSITE patternPS003500234288IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-31234254IPR002100Transcription factor, MADS-box
PfamPF003192.0E-26241288IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-31254269IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-31269290IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MHGDQAVRKS GHACIWEGTA APCLHSCTVS VSFTFNTHRS VCLYGACLVD GGSALGIRAS  60
AVVGDDDGFP FRVDSSALID RSLLFALTAR STCCSPELGN STLTDGHTAF IAFCRWWCRG  120
GGDHSTSPSP SPWTFVKKTC CELLVLPLSN MWPGCQSPIP GFVLASLLSK KRGQRRGTRG  180
GKGRRYVRSA GSCILSDMVD LPCLSGRDRE GKAERVIDLS SRSQLFRVSC RMGRGRIEIK  240
RIENTTSRQV TFCKRRNGLL KKAYELSVLC DVEVALIVFS SRGRLYEYSN NRSVDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-18232290159Myocyte-specific enhancer factor 2B
1tqe_Q1e-18232290159Myocyte-specific enhancer factor 2B
1tqe_R1e-18232290159Myocyte-specific enhancer factor 2B
1tqe_S1e-18232290159Myocyte-specific enhancer factor 2B
6c9l_A1e-18232290159Myocyte-specific enhancer factor 2B
6c9l_B1e-18232290159Myocyte-specific enhancer factor 2B
6c9l_C1e-18232290159Myocyte-specific enhancer factor 2B
6c9l_D1e-18232290159Myocyte-specific enhancer factor 2B
6c9l_E1e-18232290159Myocyte-specific enhancer factor 2B
6c9l_F1e-18232290159Myocyte-specific enhancer factor 2B
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398