PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc07475.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 778aa    MW: 82330 Da    PI: 7.9538
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc07475.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.13.9e-12383439155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  Zmw_sc07475.1.g00010.1.am.mk 383 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDMEEKAARAYDLAALKYWG 439
                                   78*******************433.44555535555.77******************98 PP
2AP224.28.2e-08482516138
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt 38 
                                   s y+GV+++++ grW A+I  +s    +k  +lg+f t
  Zmw_sc07475.1.g00010.1.am.mk 482 SIYRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFST 516
                                   57****************999754...4********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.53E-16383446No hitNo description
PfamPF008471.3E-9383439IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-13383448IPR016177DNA-binding domain
SMARTSM003807.2E-21384453IPR001471AP2/ERF domain
PROSITE profilePS5103216.937384447IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-11384447IPR001471AP2/ERF domain
CDDcd000182.68E-16482589No hitNo description
SuperFamilySSF541717.19E-6482517IPR016177DNA-binding domain
SMARTSM003804.1E-16483593IPR001471AP2/ERF domain
PROSITE profilePS5103213.485483587IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-5483516IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-6561587IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
VLQDINSVVT VAREVKLKTG RSCARGDLYT TMRKTDCETT LLVDSAHAYL PPEVGSARLG  60
SGFLPTSHRH HLVLLRLACR RHYKMTSNSS QNVSSCSTGG GDAAAGGGSW LGFSLSPHHV  120
ASMDAAADGA RGVPQHHLGL FYPPVTSSPA PFCYALGGSG QDSVVGQAAG ASGGGFYPAL  180
SSMPLRSDGS LCITDAYRRS EEGQHHGMVA SSASPKLEDF LGAGPAMALS LDNSSLYYGG  240
GHGGHHGHGQ DHGGYPQPVH CAMIPGAAAT HDVYGHASMV DEQSAAAIAA SWFAARGVGG  300
YDVNSTGVDA GLVPCHPLAL SMSSGTGSQA SCVTMQMGAH ADPVAEYIAM EGSKKRGTDR  360
GAGAGQKQTV HRKSIDTFGQ RTSQYRGVTR HRWTGRYEAH LWDNSCRKEG QTRKGRQGGY  420
DMEEKAARAY DLAALKYWGP STHINFSLED YREELEEMKN MTRQEYVAHL RRKSSGFSRG  480
ASIYRGVTRH HQHGRWQARI GRVSGNKDLY LGTFSTCSVF HLLFLSIHPW PLPGECLLRR  540
FPHTFRRAFA SASPGASPSS PTQEEAAEAY DVAAIKFRGL NAVTNFDITR YDVEKIMESS  600
TLLPSELVRR RKDGDVGTVA AAAAITEGDA TAVANAAAAL VHAGNGSNAV EWKIQAAAAL  660
PAAPGRTDEH VQQNHGILAS EAFSAFSGLD DMVPGVEADN AHMSNASSLA TSVSNSREQS  720
PERGGGLAVL FAKPVAAASK LTCPPLPLGS WVSPSPVSAR PVVSIAHLPM FAAWTDAA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796942.10.0AP2-like ethylene-responsive transcription factor CRL5
SwissprotQ84Z021e-155CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A1E5VRG80.0A0A1E5VRG8_9POAL; AP2-like ethylene-responsive transcription factor ANT
STRINGPavir.J24038.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]