PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc07458.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 419aa    MW: 45439.4 Da    PI: 10.2913
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc07458.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002297117323
                                   ETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                                   C+ Cg++F++   L  H+r+H
  Zmw_sc07458.1.g00020.1.am.mk  97 CNTCGTVFPTGQALGGHMRRH 117
                                   ********************9 PP
2zf-C2H211.80.00074313335123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C+ C+  F++   L  H+r+H
  Zmw_sc07458.1.g00020.1.am.mk 313 HRCHTCSAAFPSGQALGGHMRRH 335
                                   79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.2E-94368IPR007087Zinc finger, C2H2
SMARTSM003550.194466IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6994471IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
PfamPF139124.8E-1194119IPR007087Zinc finger, C2H2
SuperFamilySSF576671.61E-794117No hitNo description
SMARTSM003550.1695117IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.68195122IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
SuperFamilySSF576671.61E-7256283No hitNo description
PfamPF139121.7E-8260284IPR007087Zinc finger, C2H2
SMARTSM003550.19261283IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.783261288IPR007087Zinc finger, C2H2
PROSITE patternPS000280263283IPR007087Zinc finger, C2H2
PfamPF139122.9E-12312337IPR007087Zinc finger, C2H2
PROSITE profilePS501579.078313340IPR007087Zinc finger, C2H2
SMARTSM003550.078313335IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280315335IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MDHTTSRTTT NFLQLLSLSL SPASKSKVIL KGKTTRRVRL DGAFQCRTCG RRFATFQALG  60
GHRTSHKRPR VRADGLDLLL GARPGKASAA CRNVHLCNTC GTVFPTGQAL GGHMRRHRAA  120
EEFDAPALET ASSGLSEDGD DHDDEDIISE FKDQQYYTTT EDERRTNTRT VILICCVRHA  180
AVVRNTHAKT TDMATAPTAP ADVLLRLLSP PPSNNTAITN RQQQQQGKSK TPRFLSLSLS  240
PASKVVAKGR STKRARPDGA FQCRTCGRRF ATFQALGGHR TSHNRARVRA DGLDLVLGAR  300
SDGKAAAAKD SVHRCHTCSA AFPSGQALGG HMRRHRAAAE TEMAIVGLSS QEMDGENDEC  360
TMALQPRSPF VATNISFLCF VLLFFCGQQA TAAKTGQLTV FWGRNRSQGT LSEACDTGL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980041.14e-45zinc finger protein ZAT12
TrEMBLA0A368SBJ91e-43A0A368SBJ9_SETIT; Uncharacterized protein
TrEMBLK3ZLH39e-44K3ZLH3_SETIT; Uncharacterized protein
STRINGSi027432m2e-44(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650