PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc07415.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 99aa MW: 11254.8 Da PI: 5.1679 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 84.3 | 2.4e-26 | 6 | 98 | 1 | 87 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrkn 75 +ppG+rF Pt+eel+++yL++k++g + ++e+vi+ +++y+v+Pw+L++ ++e + w+fF++r++ +a+g r++ Zmw_sc07415.1.g00010.1.sm.mkhc 6 VPPGYRFYPTEEELICFYLRNKLDGLRGDIERVIPVFEVYTVDPWQLKEiherlcGGAGEGEPWFFFCPRQEGEARGGRPS 86 69****************************99***************8545655422236779****************** PP NAM 76 ratksgyWkatg 87 r+t +gyWka g Zmw_sc07415.1.g00010.1.sm.mkhc 87 RVTPTGYWKAAG 98 **********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.89E-29 | 3 | 98 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.507 | 6 | 99 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-15 | 7 | 96 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 99 aa Download sequence Send to blast |
MAANGVPPGY RFYPTEEELI CFYLRNKLDG LRGDIERVIP VFEVYTVDPW QLKEIHERLC 60 GGAGEGEPWF FFCPRQEGEA RGGRPSRVTP TGYWKAAGT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-16 | 5 | 99 | 16 | 103 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-16 | 5 | 99 | 16 | 103 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-16 | 5 | 99 | 16 | 103 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-16 | 5 | 99 | 16 | 103 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-16 | 5 | 99 | 19 | 106 | NAC domain-containing protein 19 |
3swm_B | 2e-16 | 5 | 99 | 19 | 106 | NAC domain-containing protein 19 |
3swm_C | 2e-16 | 5 | 99 | 19 | 106 | NAC domain-containing protein 19 |
3swm_D | 2e-16 | 5 | 99 | 19 | 106 | NAC domain-containing protein 19 |
3swp_A | 2e-16 | 5 | 99 | 19 | 106 | NAC domain-containing protein 19 |
3swp_B | 2e-16 | 5 | 99 | 19 | 106 | NAC domain-containing protein 19 |
3swp_C | 2e-16 | 5 | 99 | 19 | 106 | NAC domain-containing protein 19 |
3swp_D | 2e-16 | 5 | 99 | 19 | 106 | NAC domain-containing protein 19 |
4dul_A | 2e-16 | 5 | 99 | 16 | 103 | NAC domain-containing protein 19 |
4dul_B | 2e-16 | 5 | 99 | 16 | 103 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818071.1 | 2e-55 | NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 6e-31 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A1E5URX2 | 3e-55 | A0A1E5URX2_9POAL; NAC domain-containing protein 90 | ||||
STRING | Pavir.J02276.1.p | 6e-57 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Publications ? help Back to Top | |||
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