PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc07410.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | SBP | ||||||||
Protein Properties | Length: 429aa MW: 45926.9 Da PI: 6.1952 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 113.1 | 1.6e-35 | 226 | 301 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv+gCead+ e+k yhrrh+vC +++a++vl++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k Zmw_sc07410.1.g00010.1.am.mkhc 226 RCQVPGCEADIRELKGYHRRHRVCLRCAHAAAVLLDGVQKRYCQQCGKFHVLLDFDEDKRSCRRKLERHNKRRRRK 301 6************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.2E-27 | 223 | 288 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 29.615 | 224 | 301 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.12E-33 | 225 | 305 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.4E-27 | 227 | 301 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0055070 | Biological Process | copper ion homeostasis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MWPMCGGRVL PFAPPRRACH PQPPSASLPP QNPHILGADR AMDAPYSGGG GVDAGEPVWD 60 WGNLLDFVVQ DDDSLVLPWD DVAGTGAAGP TEAGASLLAT PPPQPAEVEA NQEPEPEPEP 120 VLPPLPLHVQ GIGRRVRKRD PRLVCPNYLA GRVPCACPEV DEMAAAAEVE DVATELLAGA 180 RKKVKTAGRR GKAGAVGGAG GSGGGVSTTG GGSGGGGRAV VAAEMRCQVP GCEADIRELK 240 GYHRRHRVCL RCAHAAAVLL DGVQKRYCQQ CGKFHVLLDF DEDKRSCRRK LERHNKRRRR 300 KPDSKVPFEK EMDEHLDLSA DVSGDGELRE ENIECTTSEM LETVLSNKVL DRETPMGSED 360 VLSSPTCTQP NLQNEQSKSI VTFAASVEAS SGAKQESVKL NNSPIHDLKT AYSSSVSPFL 420 IRGTYLFII |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul5_A | 4e-38 | 226 | 305 | 5 | 84 | squamosa promoter binding protein-like 7 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 283 | 301 | KRSCRRKLERHNKRRRRKP |
2 | 287 | 299 | RRKLERHNKRRRR |
3 | 294 | 301 | NKRRRRKP |
4 | 295 | 300 | KRRRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00604 | PBM | Transfer from AT5G18830 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008656292.2 | 1e-178 | squamosa promoter-binding-like protein 9 | ||||
Swissprot | Q6I576 | 1e-164 | SPL9_ORYSJ; Squamosa promoter-binding-like protein 9 | ||||
TrEMBL | A0A1D6FQA8 | 0.0 | A0A1D6FQA8_MAIZE; Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein | ||||
TrEMBL | A0A1D6FQB0 | 0.0 | A0A1D6FQB0_MAIZE; Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein | ||||
TrEMBL | A0A1D6FQB1 | 1e-179 | A0A1D6FQB1_MAIZE; Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein | ||||
TrEMBL | A0A1D6FQB3 | 1e-179 | A0A1D6FQB3_MAIZE; Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein | ||||
TrEMBL | A0A1D6FQB4 | 0.0 | A0A1D6FQB4_MAIZE; Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein | ||||
STRING | GRMZM2G109354_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6922 | 33 | 44 |
Publications ? help Back to Top | |||
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