PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc07405.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 491aa MW: 51340 Da PI: 10.4311

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc07405.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.5	5.2e-37	132	190	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 e lkcprCdstntkfCy+nnyslsqPr+fC+aCrryWt+GGalrnvPvGgg r++ k+ Zmw_sc07405.1.g00010.1.am.mk 132 EPGLKCPRCDSTNTKFCYFNNYSLSQPRHFCRACRRYWTRGGALRNVPVGGGYRRHAKR 190 56789************************************************998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-38	115	187	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.789	135	189	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-31	135	189	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	137	173	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009640	Biological Process	photomorphogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence Send to blast
MDWLRVSQCE RRNCDARAVA GRTPAQSNPP ADRASPAASP PPPTMIFPPA FLDSSSWNDN 60 QHHQQQQQAH HQVAANNGDG TNHEQLLHPS IMSGGALPEG GGGAGAGAQM VGPAKPMSMS 120 ERARLARIPL PEPGLKCPRC DSTNTKFCYF NNYSLSQPRH FCRACRRYWT RGGALRNVPV 180 GGGYRRHAKR AKPKAAAAAT PAGTTAAATA ALVPSGSTSS TCTTANAPAL SGPAGMLGGN 240 LSMLPPLLRL ADFDAMSLGS SFTGIGKPTL DAAGNYSIGG ASGGGAGAGL EQWRVHQQMQ 300 GFPFLHAMDQ GSLPPSLAMV MPGAFQLGLD TTDGRGVGTG GGEDGSTGDL NGMPTKREGG 360 YPRGMYGDHH LAAGYTTSPR EDPTRPMAGR QASCSSLPQS SVHHPTPRTG QKKKGKSAFA 420 CRRLRSCQPV HKKPPVSSSP PLFLAEHQQQ RQRAKMSIRK ALGAVKDQTT ISLAKVTGAV 480 SPDLDVAVVR A

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence Send to blast

MDWLRVSQCE RRNCDARAVA GRTPAQSNPP ADRASPAASP PPPTMIFPPA FLDSSSWNDN  60
QHHQQQQQAH HQVAANNGDG TNHEQLLHPS IMSGGALPEG GGGAGAGAQM VGPAKPMSMS  120
ERARLARIPL PEPGLKCPRC DSTNTKFCYF NNYSLSQPRH FCRACRRYWT RGGALRNVPV  180
GGGYRRHAKR AKPKAAAAAT PAGTTAAATA ALVPSGSTSS TCTTANAPAL SGPAGMLGGN  240
LSMLPPLLRL ADFDAMSLGS SFTGIGKPTL DAAGNYSIGG ASGGGAGAGL EQWRVHQQMQ  300
GFPFLHAMDQ GSLPPSLAMV MPGAFQLGLD TTDGRGVGTG GGEDGSTGDL NGMPTKREGG  360
YPRGMYGDHH LAAGYTTSPR EDPTRPMAGR QASCSSLPQS SVHHPTPRTG QKKKGKSAFA  420
CRRLRSCQPV HKKPPVSSSP PLFLAEHQQQ RQRAKMSIRK ALGAVKDQTT ISLAKVTGAV  480
SPDLDVAVVR A

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00407	DAP	Transfer from AT3G55370	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025807608.1	1e-115	dof zinc finger protein DOF3.6-like isoform X1
TrEMBL	A0A0A9DJ88	1e-127	A0A0A9DJ88_ARUDO; Uncharacterized protein
STRING	Pavir.Ca00639.1.p	1e-115	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367