PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc07334.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Nin-like

Protein Properties

Length: 860aa MW: 93357 Da PI: 6.1116

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc07334.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.2	1.2e-26	622	671	2	51
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 ek++sle+l++yFs+ +kdAA++Lgvc+T++KriCRq+GI+RWP+R+i++ Zmw_sc07334.1.g00020.1.am.mk 622 EKTVSLEELQRYFSGRMKDAARSLGVCPTTMKRICRQHGISRWPFRQIAK 671 799*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.325	602	692	IPR003035	RWP-RK domain
Pfam	PF02042	6.9E-24	624	671	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.57E-18	750	822	No hit	No description
PROSITE profile	PS51745	17.024	755	848	IPR000270	PB1 domain
SMART	SM00666	2.0E-17	755	848	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.8E-21	756	822	No hit	No description
Pfam	PF00564	4.7E-13	756	825	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 860 aa Download sequence Send to blast
MECAEKMECD AIPTELKETA TYLLTALPGV DGIAQTKSIC KLNILRRPMA ARHLLKRRAR 60 VADLRSRRVD LLHAMERGAD MDTVLRSFDH LLDRDGARGS SAGWWRYSIC CGSDDRSRSG 120 GSAAGKVRDT VDGCAAVKER IARALRIYKE AAEHDDGXXX XXXXXXXXXX XPARDGARRV 180 LATRGQPFVL APPQCHRLFQ YRTVSLTHAF PVGGPGAAAP GERGMPGRVF DAGTPEWTPN 240 VQYYGTGEYA RISYALIYDI QAALALPILE PDTGACLAVL ELVMTSPRLR FADEVDKLCK 300 ALQAVELRGS DICCPVAEVC SDEAAEQAMS EVSGVLTTVC EAHQLPLAQP WVRCKRCNST 360 SMEHASLTTA GAPFHLSGDE GVRGFREACV EQHLREGRGG LVEGAATARG PRFCADVTKY 420 SMDEYPLAHH ARFSGLAGCL AVCVELRRDA GGEGGREECV LEFFLPPDCS DGQAQKAAVE 480 AVAATIRECF GNGDLKAIAL CGSQDLAFEI VADDECVLRP DRAIMADAPD PELQLDNHGR 540 YAPDHTIMAD TPDPELQLDN HGGYVRDSDD EDVHLSAAIR GADVDAPEMK NDEQKEGEDP 600 EPQDGNSRRR RKKKKVGKRK NEKTVSLEEL QRYFSGRMKD AARSLGVCPT TMKRICRQHG 660 ISRWPFRQIA KANNSLDKVK RIFESVQYSP QPMAAPAASQ QAPALATAHG PPAALPCLSS 720 ALGVASSQGS CQEPPPPRKR SITRKPFHAG DTQGLVTVKA SYRGDIVRFR VPSFAGVEAV 780 KGEVAKRLGL EMDAFDVKYL DDDNEWVLLS CDADFQECLE VFPALSTASS SSGSGAAQPV 840 VRLMVQEVAD NHGSSCASSD

Sequence ? help Back to Top

Protein Sequence Length: 860 aa Download sequence Send to blast

MECAEKMECD AIPTELKETA TYLLTALPGV DGIAQTKSIC KLNILRRPMA ARHLLKRRAR  60
VADLRSRRVD LLHAMERGAD MDTVLRSFDH LLDRDGARGS SAGWWRYSIC CGSDDRSRSG  120
GSAAGKVRDT VDGCAAVKER IARALRIYKE AAEHDDGXXX XXXXXXXXXX XPARDGARRV  180
LATRGQPFVL APPQCHRLFQ YRTVSLTHAF PVGGPGAAAP GERGMPGRVF DAGTPEWTPN  240
VQYYGTGEYA RISYALIYDI QAALALPILE PDTGACLAVL ELVMTSPRLR FADEVDKLCK  300
ALQAVELRGS DICCPVAEVC SDEAAEQAMS EVSGVLTTVC EAHQLPLAQP WVRCKRCNST  360
SMEHASLTTA GAPFHLSGDE GVRGFREACV EQHLREGRGG LVEGAATARG PRFCADVTKY  420
SMDEYPLAHH ARFSGLAGCL AVCVELRRDA GGEGGREECV LEFFLPPDCS DGQAQKAAVE  480
AVAATIRECF GNGDLKAIAL CGSQDLAFEI VADDECVLRP DRAIMADAPD PELQLDNHGR  540
YAPDHTIMAD TPDPELQLDN HGGYVRDSDD EDVHLSAAIR GADVDAPEMK NDEQKEGEDP  600
EPQDGNSRRR RKKKKVGKRK NEKTVSLEEL QRYFSGRMKD AARSLGVCPT TMKRICRQHG  660
ISRWPFRQIA KANNSLDKVK RIFESVQYSP QPMAAPAASQ QAPALATAHG PPAALPCLSS  720
ALGVASSQGS CQEPPPPRKR SITRKPFHAG DTQGLVTVKA SYRGDIVRFR VPSFAGVEAV  780
KGEVAKRLGL EMDAFDVKYL DDDNEWVLLS CDADFQECLE VFPALSTASS SSGSGAAQPV  840
VRLMVQEVAD NHGSSCASSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	608	614	RRRKKKK
2	609	614	RRKKKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823617.1	0.0	protein NLP3-like
TrEMBL	A0A2S3GLE7	0.0	A0A2S3GLE7_9POAL; Uncharacterized protein
STRING	Si016430m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6269	29	39