PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc07250.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

YABBY

Protein Properties

Length: 731aa MW: 78073.6 Da PI: 9.8796

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc07250.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	78.5	2.1e-24	278	326	5	53
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlaka 53 +seq+Cyv+C fC+t+l+vsvP+tslfk+vtvrCGhC+sll+vn++ Zmw_sc07250.1.g00010.1.am.mk 278 PASEQLCYVHCHFCDTVLVVSVPTTSLFKTVTVRCGHCSSLLTVNMRGL 326 689****************************************999765 PP
2	YABBY	124.6	1.5e-38	511	587	92	170
YABBY 92 astsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 a++s ++++ ++ +++ + PekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl Zmw_sc07250.1.g00010.1.am.mk 511 ARSSAPATS--VTAVQQQQQQLATRMSPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 587 233333322..22223333333445789*************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.8E-24	279	334	IPR006780	YABBY protein
Pfam	PF04690	1.1E-37	515	587	IPR006780	YABBY protein
SuperFamily	SSF47095	7.4E-7	533	580	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 731 aa Download sequence Send to blast
MWWAGGHHAT SGESVDLWLA FVPCAQSRSL SPRDPPVDRP PAWVPAGATF VRPANLVARL 60 PEPSGNLAPR DTAGTHVMQM QDRSGGGRRR GSYEEEAAQR PAGKRRSPSG ASQLTAATVV 120 TGDTAQAGDD EPGKTDFDCR ARRDRAIDRA DAARSTSPTG WPLLVCHDSY ALGGISRVDE 180 EEYGMGSSTS RLLATKKKTH HLLALLLRVL CCCFRQVIPA IDRSVGWWLS VGMSSSSSSS 240 SAASAAVVFP PSPQPQMPPP LLVENLPPLN PLSLVVAPAS EQLCYVHCHF CDTVLVVSVP 300 TTSLFKTVTV RCGHCSSLLT VNMRGLLFPG TPTNIGAAAA APASVTSAAT TTTTTAITTP 360 PVITSVNNND HQFHFPNSLN LAPNPPHQHS ILDEISSAHP SLQMLEQQGL SGLISGARNV 420 VTAPAPPPPL PVAGKGAKEP SPRTNNAVAN RRSQMERLNW VFPHAPGGRA RHGMAFSLCE 480 KIVSGSAGAR PPLLLSRDVT ASRRALARAS ARSSAPATSV TAVQQQQQQL ATRMSPEKRQ 540 RVPSAYNRFI KDEIQRIKAG NPDISHREAF SAAAKNWAHF PHIHFGLMPD HHGLKKTNLL 600 PQEYQRKDGL LKEGLYTAAA AAAAAANMGA AGCCAFAPTR SLLESIRPAA STYPVHQSKH 660 ATRLASSGRS PCPPPLRPDS KRYDLTDIAL GVVPFFGRSS EQIEQQERFL PRVVGSADVK 720 EQDSAIPLLS R

Sequence ? help Back to Top

Protein Sequence Length: 731 aa Download sequence Send to blast

MWWAGGHHAT SGESVDLWLA FVPCAQSRSL SPRDPPVDRP PAWVPAGATF VRPANLVARL  60
PEPSGNLAPR DTAGTHVMQM QDRSGGGRRR GSYEEEAAQR PAGKRRSPSG ASQLTAATVV  120
TGDTAQAGDD EPGKTDFDCR ARRDRAIDRA DAARSTSPTG WPLLVCHDSY ALGGISRVDE  180
EEYGMGSSTS RLLATKKKTH HLLALLLRVL CCCFRQVIPA IDRSVGWWLS VGMSSSSSSS  240
SAASAAVVFP PSPQPQMPPP LLVENLPPLN PLSLVVAPAS EQLCYVHCHF CDTVLVVSVP  300
TTSLFKTVTV RCGHCSSLLT VNMRGLLFPG TPTNIGAAAA APASVTSAAT TTTTTAITTP  360
PVITSVNNND HQFHFPNSLN LAPNPPHQHS ILDEISSAHP SLQMLEQQGL SGLISGARNV  420
VTAPAPPPPL PVAGKGAKEP SPRTNNAVAN RRSQMERLNW VFPHAPGGRA RHGMAFSLCE  480
KIVSGSAGAR PPLLLSRDVT ASRRALARAS ARSSAPATSV TAVQQQQQQL ATRMSPEKRQ  540
RVPSAYNRFI KDEIQRIKAG NPDISHREAF SAAAKNWAHF PHIHFGLMPD HHGLKKTNLL  600
PQEYQRKDGL LKEGLYTAAA AAAAAANMGA AGCCAFAPTR SLLESIRPAA STYPVHQSKH  660
ATRLASSGRS PCPPPLRPDS KRYDLTDIAL GVVPFFGRSS EQIEQQERFL PRVVGSADVK  720
EQDSAIPLLS R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	195	199	KKKTH

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22855	5	6