PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc07226.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bZIP

Protein Properties

Length: 340aa MW: 36783.1 Da PI: 5.088

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc07226.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	27.1	9.3e-09	152	191	13	52
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 13 NReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 NR +A rs +RK +i eLe+kv++L++e ++L +l Zmw_sc07226.1.g00020.1.sm.mkhc 152 NRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLF 191 *********************************9888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.0E-7	144	204	IPR004827	Basic-leucine zipper domain
CDD	cd14703	9.77E-21	149	194	No hit	No description
SuperFamily	SSF57959	2.46E-9	149	195	No hit	No description
Pfam	PF00170	7.4E-7	151	190	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.6E-7	151	198	No hit	No description
PROSITE profile	PS50217	9.036	152	205	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
SEVAFRFPDD LDLGGCGGPG GDGLNEISSE VDLFSTFMDI EKISSAGPAE SSSPPRPKHR 60 HSTSVDGSGL FFSPGSGGGS AASLADVLEA KKAMSPEQLA ELAAIDPKRA KRCCLLDLSP 120 ILTDLPTTIV RPQLASDLTY FPLNDAAEIL ANRQSAARSK ERKARYITEL ERKVQTLQTE 180 ATTLSAQLTL FQRDTTGLSA ENAELKISLQ AMEQQAQLRD ALNDALKQEL ERLKLATGEA 240 TNSDEMYNMR FQHLPCNSSF FPLSQQNTAQ HQGGAQLPPA FHLPHHNVPN YQILSHPNTR 300 QDIMQQDSIG RFQGLDIGKG PLVVKSESSS ISASESSSTF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795608.1	1e-155	transcription factor RF2b
Swissprot	Q6S4P4	1e-135	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A2S3IQW4	1e-153	A0A2S3IQW4_9POAL; Uncharacterized protein
STRING	Si036380m	1e-149	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2683	36	83

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]