PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc07082.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 259aa    MW: 28190.7 Da    PI: 9.8671
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc07082.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.36.1e-21105154255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +grW+AeIrdp     +  +r++lg+f+taeeAa+a++aa ++l+g
  Zmw_sc07082.1.g00020.1.am.mk 105 RYTGVRRRP-WGRWAAEIRDP-----QlrRRVWLGTFDTAEEAAAAYDAACRRLRG 154
                                   69*******.**********9.....445*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-14105154IPR001471AP2/ERF domain
PROSITE profilePS5103222.589105162IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-20105162IPR016177DNA-binding domain
CDDcd000187.73E-15105160No hitNo description
Gene3DG3DSA:3.30.730.102.1E-27105161IPR001471AP2/ERF domain
SMARTSM003806.8E-29105168IPR001471AP2/ERF domain
PRINTSPR003671.8E-10106117IPR001471AP2/ERF domain
PRINTSPR003671.8E-10128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDPSLETRKA AAGEAAVGIE EDKLTVEVEE PAAPRCRLVR IIVHDEDATD SSSDEDDDEG  60
QEERKRRVQP PAAAPAGVKR KRVMLRAAGG EGEERKKAAA EEEVRYTGVR RRPWGRWAAE  120
IRDPQLRRRV WLGTFDTAEE AAAAYDAACR RLRGSGAATN LSSGDTTPAH RPAAAPLPRR  180
PPLPPIRRPP QQEKKPPPPP PSQDSPPETE KRTAASSSPE PFVPLPVWAL LSGKRKKRSG  240
CGGRVPALRT PPAEEASRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1797161671Ethylene-responsive transcription factor ERF096
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16481KRRVQPPAAAPAGVKRKR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2769534