PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc07063.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HSF

Protein Properties

Length: 403aa MW: 44672.9 Da PI: 4.6725

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc07063.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	108.6	4.6e-34	49	141	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiwe 80 Fl+k+y++++d++++++isw + g sfv++d++ f++++Lp++Fkh++f+SF+RQLn+YgF+kv+ ++ we Zmw_sc07063.1.g00030.1.sm.mkhc 49 FLTKVYDMVSDPATDSVISWGAGGGSFVIWDSHAFERDLLPRHFKHNHFTSFIRQLNTYGFHKVDPDR---------WE 118 9**************************************************************999......... PP EEESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 81 FkhksFkkgkkellekikrkkse 103 ++++ F k++k+ll++ikrkk++ Zmw_sc07063.1.g00030.1.sm.mkhc 119 WANEGFIKDQKHLLKTIKRKKKT 141 ********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	1.8E-54	45	138	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	5.08E-34	45	138	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	2.6E-36	46	138	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.6E-17	49	72	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	7.1E-30	49	138	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.6E-17	87	99	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.6E-17	100	112	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MGSKKRSPQP AAGGGGEAPG DVGAPPARKD PALAPPVRVV PKPPDVAPFL TKVYDMVSDP 60 ATDSVISWGA GGGSFVIWDS HAFERDLLPR HFKHNHFTSF IRQLNTYGFH KVDPDRWEWA 120 NEGFIKDQKH LLKTIKRKKK TSQEAPDPPQ APVKPAPGTE NIEIGNYGGL EKEVETLKRD 180 KTLLMQQLVD LRHYQQSSGL ELQNLIQRLH VMEQNQQQMM ALLAIVVQNP DFLNQLVQQQ 240 RRNNWWNDDG SKKRRFIALD QGPAAEQENS GAGAPIIQYR PPVPEVSNQA IPVDGGFCAT 300 PVESDSSPAL AMPMDAETTS NNDDTLGSTR DHFIGSPGLC DWEDVDMDAL FKDLDSMDTS 360 AENDAQMEVP LSVDDYPQLE RDCQMEAQQN CRNPQFADVS AEA

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MGSKKRSPQP AAGGGGEAPG DVGAPPARKD PALAPPVRVV PKPPDVAPFL TKVYDMVSDP  60
ATDSVISWGA GGGSFVIWDS HAFERDLLPR HFKHNHFTSF IRQLNTYGFH KVDPDRWEWA  120
NEGFIKDQKH LLKTIKRKKK TSQEAPDPPQ APVKPAPGTE NIEIGNYGGL EKEVETLKRD  180
KTLLMQQLVD LRHYQQSSGL ELQNLIQRLH VMEQNQQQMM ALLAIVVQNP DFLNQLVQQQ  240
RRNNWWNDDG SKKRRFIALD QGPAAEQENS GAGAPIIQYR PPVPEVSNQA IPVDGGFCAT  300
PVESDSSPAL AMPMDAETTS NNDDTLGSTR DHFIGSPGLC DWEDVDMDAL FKDLDSMDTS  360
AENDAQMEVP LSVDDYPQLE RDCQMEAQQN CRNPQFADVS AEA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	2e-22	43	138	14	120	Heat shock factor protein 1
5d5u_B	2e-22	43	138	23	129	Heat shock factor protein 1
5d5v_B	2e-22	43	138	23	129	Heat shock factor protein 1
5d5v_D	2e-22	43	138	23	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002468244.1	0.0	heat stress transcription factor A-9
Refseq	XP_021306702.1	0.0	heat stress transcription factor A-9
Swissprot	Q10PR4	0.0	HSFA9_ORYSJ; Heat stress transcription factor A-9
TrEMBL	A0A1E5WFT3	0.0	A0A1E5WFT3_9POAL; Heat stress transcription factor A-9
STRING	Sb01g042370.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11494	30	39

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]