PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc07050.1.g00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | TCP | ||||||||
Protein Properties | Length: 208aa MW: 21738.4 Da PI: 10.5718 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 112.2 | 7.3e-35 | 54 | 162 | 9 | 89 |
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasn 84 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a ++ +++ssss ++ Zmw_sc07050.1.g00030.1.sm.mk 54 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAVFVsssapSTSSSSSHYQQ 134 89*******************************************************999994443222211111111111 PP TCP 85 sssg..........................k 89 + + Zmw_sc07050.1.g00030.1.sm.mk 135 ---SvlgkrpreegdatvaaasafwaalpsA 162 ...1334445555555555555555554442 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.1E-31 | 52 | 138 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.009 | 53 | 107 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MPTRDVSTAA AAMFHVYQPA QIPSTAAPAT AATDGTVAVP TSTQGKKKSA QGGKDRHSKV 60 NGRGRRVRMP IVCAARVFQL TRELGLKSDG QTIEWLLRQA EPSILAATGS GTTPAVFVSS 120 SAPSTSSSSS HYQQSVLGKR PREEGDATVA AASAFWAALP SAAPRTEAWG FSPLEAQAAT 180 YVPMAQAHHL NLLAALSGAA RRAEEETR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00655 | PBM | Transfer from LOC_Os02g42380 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002452500.1 | 1e-84 | transcription factor TCP7 | ||||
Swissprot | Q9FMX2 | 7e-40 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | C5XY73 | 3e-83 | C5XY73_SORBI; Uncharacterized protein | ||||
STRING | Sb04g026970.1 | 5e-84 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 |