PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc07029.1.g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 492aa MW: 53173.9 Da PI: 7.5468 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56 | 9.4e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEde l++++k++G g+W++ +++ g+ R++k+c++rw +yl Zmw_sc07029.1.g00020.1.am.mk 14 KGRWTKEEDEVLAKYIKEHGEGSWRSLPKKAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 31.1 | 5.3e-10 | 252 | 281 | 18 | 48 |
HTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 18 qlGggtWktIartmgkgRtlkqcksrwqkyl 48 q + +W++Ia +++ gRt++++k++w+++l Zmw_sc07029.1.g00020.1.am.mk 252 QIDTCQWSLIAGHLP-GRTDNEIKNHWNSHL 281 334449*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.81 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 7.1E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.8E-21 | 15 | 90 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.04E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS50090 | 4.147 | 62 | 115 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-7 | 65 | 90 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-8 | 66 | 283 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.08E-7 | 247 | 283 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.50E-6 | 250 | 281 | No hit | No description |
Pfam | PF00249 | 1.9E-7 | 255 | 281 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-12 | 257 | 281 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.539 | 257 | 281 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 492 aa Download sequence Send to blast |
MGRAPCCEKV GLKKGRWTKE EDEVLAKYIK EHGEGSWRSL PKKAGLLRCG KSCRLRWINY 60 LRADLKRGNI SEEEEEMILK LHATLGNRYA LRHLSLKLRL GRRPGVTRAR SLSSIDVAGS 120 SAAGYCPATA GGGRQRAREV KGDGRCTAPS ASGIALLGSR ALKRHTPGTR RAAAGVQTPN 180 EAPSLVDHCT WRYGVPGLQE HMGSLSLTAP CMLGSCWGAL RVPSSFFHVR GVLRVIVSFL 240 DLGTGLHTTC RQIDTCQWSL IAGHLPGRTD NEIKNHWNSH LSGRASDFRL GGNGQAAGRG 300 KRRGGRTSRG GNATAAKGKE KEKTAEVMLL HEVKKGQEKD TDAPTPSYQP RHDQSEEHAS 360 ASGVTSDGLE SDGPLGLTEE MVSAPLGHAS PKLEMGPDGA CVDHKIGLCM DSDDWPRVQS 420 GSGPDGLPSG DVAQELGDNK ALEDWDLTEL DLAVDHDAWD SLAWDYDEMV DVVPQGGQQG 480 ELVPDLFFLD NM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-13 | 12 | 90 | 5 | 82 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105092.1 | 1e-50 | R2R3 Myb transcription factor MYB-IF35 | ||||
TrEMBL | A0A0A9IUA4 | 2e-56 | A0A0A9IUA4_ARUDO; MYB-IF35 | ||||
STRING | GRMZM2G051256_P01 | 5e-50 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP33408 | 3 | 4 |