PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc06980.1.g00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HB-other | ||||||||
Protein Properties | Length: 196aa MW: 21711.6 Da PI: 9.441 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.6 | 8.6e-08 | 142 | 175 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+ e++++L +++gL+ +q+ +WF N+R + Zmw_sc06980.1.g00030.1.sm.mkhc 142 KWPYPTDEDKTRLVQETGLQLKQINNWFINQRKR 175 569*****************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 2.3E-19 | 34 | 78 | IPR005540 | KNOX1 |
Pfam | PF03790 | 8.3E-17 | 37 | 74 | IPR005540 | KNOX1 |
PROSITE profile | PS50071 | 11.645 | 116 | 179 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.27E-16 | 118 | 184 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.8E-10 | 118 | 183 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.45E-11 | 119 | 180 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-24 | 123 | 182 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.9E-18 | 136 | 175 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MMAFQYADHE LGMDTAAAAA NPGFGAGVVG SGWEREKAAI AAHPLYERLL EAHVACLRVA 60 TPVEQLPRID AQIAARPPPM AAAAAAAAVG GAQSGDEELD LFMGYREKLV DIREEIMRKR 120 RAGKLPGDTA STLKAWWQAH SKWPYPTDED KTRLVQETGL QLKQINNWFI NQRKRNWHNN 180 LASSSSDKSK RKSFWA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Isoform 3 acts as transcription activator, but isoforms 1 and 2 do not. {ECO:0000269|PubMed:7599652}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q0J6N4 | 4e-51 | KNOSD_ORYSJ; Homeobox protein knotted-1-like 13 | ||||
TrEMBL | A3A3U6 | 7e-69 | A3A3U6_ORYSJ; Uncharacterized protein | ||||
STRING | OGLUM06G23980.1 | 3e-54 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP46069 | 3 | 3 |