PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06969.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 1044aa    MW: 112690 Da    PI: 7.7126
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06969.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.34.8e-10380425146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   +g+W +eEd  l + v+++G  +W++I ++  + R +k+c++rw +
  Zmw_sc06969.1.g00010.1.am.mk 380 KGPWLPEEDAVLRRHVAEHGEQDWSSIQSKGLLDRPGKSCRLRWVN 425
                                   79*************************999889***********87 PP
2Myb_DNA-binding38.13.5e-12434475245
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                   g++++eE+   +d+ +q G++ W+ Ia ++  gRt++++k++w 
  Zmw_sc06969.1.g00010.1.am.mk 434 GKFSPEEERVVLDLQAQVGNK-WAMIATHLH-GRTDNDVKNFWS 475
                                   79*******************.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.550.105.8E-6547316IPR029044Nucleotide-diphospho-sugar transferases
PfamPF092583.0E-6750313IPR015338Exostosin , C-terminal
PROSITE profilePS5129415.119375427IPR017930Myb domain
SuperFamilySSF466893.05E-24378474IPR009057Homeodomain-like
SMARTSM007173.9E-9379429IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-18381434IPR009057Homeodomain-like
CDDcd001674.06E-9382427No hitNo description
PfamPF139211.4E-10383442No hitNo description
PROSITE profilePS5129420.537428482IPR017930Myb domain
SMARTSM007176.4E-11432480IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-19435480IPR009057Homeodomain-like
CDDcd001671.00E-7435474No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006024Biological Processglycosaminoglycan biosynthetic process
GO:0015012Biological Processheparan sulfate proteoglycan biosynthetic process
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1044 aa     Download sequence    Send to blast
MPPRSRHRLR LRLRLRLLFL FLVELPVVAF ARIGGVKEDP DEALPRPDRL TVLLSGYSER  60
RLPLLRAITG AYSAHPLVLS VVVIWCNPAT PDRVLHGGGG FPPLVTLHRA ASASLNSRFL  120
PNSAILTSAV AVADDDVLPD AAALSFAFAA WQQQAARSGG ALVGFFPRSH HLDLARGRWA  180
YAGAEPGRYS MVLTKFMVLG ADLLRKYSCS PELAAARAVV DRVRNCEDIL MNFVAADESG  240
QGPVLVEAGS VRDWGDPRND ANASGDGEAG GAMKDVGLSS TGGTGHWEKR GECITEFHRL  300
LGRMPLRYSY GKLVEAAVGE QGLCSKGGRL VRCDQDPGEL GTARRESASL AWSRWPRAGG  360
ERARMPPRRR GGGDRPAVKK GPWLPEEDAV LRRHVAEHGE QDWSSIQSKG LLDRPGKSCR  420
LRWVNKLQPG LKGGKFSPEE ERVVLDLQAQ VGNKWAMIAT HLHGRTDNDV KNFWSTRQKR  480
LARLLLEPPP RRRAVRQNSS SASSARCREL RARLQEPCSS ITTFHASTYD GGQSSSQEPN  540
EVEHGVDSRL PGALCLPAPV DSAVGRGSPS VVPSDETCAE NPVPGAGAVG LASLHHAAFV  600
EPLAAVPTAL SFGPEDGSVL CDNEAHCIEP QPLVVIPADP FLHDEYFAAA AAPRRDTSGL  660
RFDDLTPEML DFFEQICVLS SARPCPFFVA SACPFKTTAH VSSPRHARSQ ASRGPQSRRA  720
RVAVRDWKVG ASRPFQSWNR SITTLRSPLH LSALLRCRAQ LSPRVQIPPA SRRCRTYHSK  780
DERSSTRETE ATGTSRREQS AASEMVVLME EFGGLSLKRK GADEPELFDV GGDDRSVFPL  840
SCRATKMRRL ASPDGGQDGP GPAVSGGGWV QGQGDLAMGD AAPAPSPAAE EERAVVLYGG  900
PGAPDAAESA SRPRPCSVRV DADWVRAMLR EADSRTVRDL LAGALEHCDD RGLAVVPWVP  960
PSPAEEAEPS TAAEAADGVD GEGAAAMDVE EEGEDQVPRW TGQTTFGSAG AGFGEGCMYR  1020
WPQHCMVPPR LPVLGQVSPV MWSW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-2337648023126MYB TRANSFORMING PROTEIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1515RHRLRLRLRLR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1263434