PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc06963.1.g00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 229aa MW: 25066.7 Da PI: 7.1425 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.7 | 3.3e-11 | 69 | 116 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRd++N++f eL +l + + +K++K++iL A++ +++L Zmw_sc06963.1.g00030.1.sm.mkhc 69 TKACREKIRRDKLNKRFLELGAILEPG---KTPKMDKSAILNDAIRVVSEL 116 7789**********************9...9***************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.455 | 65 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.04E-9 | 68 | 121 | No hit | No description |
Pfam | PF00010 | 5.4E-9 | 69 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.7E-13 | 69 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-13 | 69 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-9 | 71 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd14686 | 2.98E-4 | 131 | 163 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MASSEGSAWV FDCPLIDDIS AAEFAAAPAG GFYWTSTPMQ AQPPSQPIAA TAPPNPPWPR 60 SECGAQPSTK ACREKIRRDK LNKRFLELGA ILEPGKTPKM DKSAILNDAI RVVSELRTEA 120 QKLKDSNESL QEKIKELKAE KNELREEKQR LKAEKESLEQ QIKFMNARPS LVAHPPVIPA 180 SAFTAPQGPA AGQKLMMPVI GYPGFPMWQF MPPSDVDTSD DPKSCPPVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021309976.1 | 1e-116 | transcription factor ILR3 isoform X1 | ||||
Swissprot | Q9FH37 | 3e-70 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A0C5DR54 | 1e-137 | A0A0C5DR54_ELECO; BHLH transcription factor bHLH57 | ||||
STRING | OPUNC07G16420.1 | 1e-122 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2023 | 38 | 85 |