PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc06925.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 280aa MW: 30960.6 Da PI: 9.5603

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc06925.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.9	4.8e-50	142	267	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 +pGfrFhPt+eel+ +yL++kveg+++++ + i+++d+y+++Pw+Lp+++ + kew+f+++rd+ky++g+r+nr+t+sgy Zmw_sc06925.1.g00010.1.am.mk 142 MPGFRFHPTEEELIEFYLRRKVEGRRFNV-DLIADLDLYRFDPWELPAMAVMGGKEWFFYVPRDRKYRNGDRPNRVTASGY 221 79*************************.99***********7767789*********************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wkatg d+ + ++++ +glkktLvfy+g+apkg++++W+m+eyrl Zmw_sc06925.1.g00010.1.am.mk 222 WKATGADRMIRGENNRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 267 ******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.06E-55	141	272	IPR003441	NAC domain
PROSITE profile	PS51005	51.717	141	280	IPR003441	NAC domain
Pfam	PF02365	6.4E-25	143	267	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MHVLTCQRAR RSSSEREAAE ASTDRRQEFG RGSRPKLDSS WLVSFASLNP TTPPSPSTRQ 60 GSSRHKQLRS CDSCAQNHST TCTAALDFSS ILRVRASYAM SRDLEDGHGG AVAAGGGAGS 120 SEASVGGGAG DGGDSHDNDL VMPGFRFHPT EEELIEFYLR RKVEGRRFNV DLIADLDLYR 180 FDPWELPAMA VMGGKEWFFY VPRDRKYRNG DRPNRVTASG YWKATGADRM IRGENNRPIG 240 LKKTLVFYSG KAPKGVRSSW IMNEYRLPPP AADADPLTHK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-54	143	271	19	146	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-54	143	271	19	146	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-54	143	271	19	146	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-54	143	271	19	146	NO APICAL MERISTEM PROTEIN
3swm_A	5e-54	143	271	22	149	NAC domain-containing protein 19
3swm_B	5e-54	143	271	22	149	NAC domain-containing protein 19
3swm_C	5e-54	143	271	22	149	NAC domain-containing protein 19
3swm_D	5e-54	143	271	22	149	NAC domain-containing protein 19
3swp_A	5e-54	143	271	22	149	NAC domain-containing protein 19
3swp_B	5e-54	143	271	22	149	NAC domain-containing protein 19
3swp_C	5e-54	143	271	22	149	NAC domain-containing protein 19
3swp_D	5e-54	143	271	22	149	NAC domain-containing protein 19
4dul_A	4e-54	143	271	19	146	NAC domain-containing protein 19
4dul_B	4e-54	143	271	19	146	NAC domain-containing protein 19
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004962060.1	1e-106	NAC domain-containing protein 35
TrEMBL	K3Z6L9	1e-105	K3Z6L9_SETIT; Uncharacterized protein
STRING	Pavir.J00477.1.p	1e-108	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2826	37	87