PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc06843.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 439aa MW: 46527.5 Da PI: 7.3816

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc06843.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.6	2.3e-29	130	233	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGa 76 +C++C+vlr++C ++C ++p++ p++q++++ +++k++G++ +l+l++a+p++ r+++++sl+yeA+ r+ +P+yG+ Zmw_sc06843.1.g00020.1.am.mk 130 SCNGCRVLRKGCGDSCSIRPCLqwiksPDAQSNATVFLAKFYGRAGLLSLVNAAPQHLRPAVFRSLLYEACGRIVNPIYGS 210 6****************************************************************************** PP DUF260 77 vgvilklqqqleqlkaelallke 99 vg++++++++++q+++e++l ++ Zmw_sc06843.1.g00020.1.am.mk 211 VGLLWSGNWNMCQAAVEAVLKGA 233 ***************998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.369	129	235	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-23	130	228	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MKTSNRPPLV FARAFLVSWG GNRPGSKTVG GNVGLGSGFT GRAAILFDVA SLVTVGVRQN 60 IGRGSNAAFP VFAKPLAVCL LSLSLSSQLG TCIKVLSPDF PLPHHCSSPL LLPSLRISLL 120 GVGEENMRLS CNGCRVLRKG CGDSCSIRPC LQWIKSPDAQ SNATVFLAKF YGRAGLLSLV 180 NAAPQHLRPA VFRSLLYEAC GRIVNPIYGS VGLLWSGNWN MCQAAVEAVL KGAPIVKISS 240 DEAAADTPSP AHLHKAAYDI RHVAASSSSD KPGRLKKRTS ASSAAAAAAA ATTTTACSNK 300 KSKKAAPDDD HQQQEVSAAS DHHHLHVVEP MDSDDAEAAG SHVSQAEQST HSEREAEQSI 360 HNEREAEQSI HNERESEQST HDEQQVEEKP QEQMGLDLTL GFVPIPAQCV PRPAPDAGDA 420 GCSITGTGWT AHDPAFRFL

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MKTSNRPPLV FARAFLVSWG GNRPGSKTVG GNVGLGSGFT GRAAILFDVA SLVTVGVRQN  60
IGRGSNAAFP VFAKPLAVCL LSLSLSSQLG TCIKVLSPDF PLPHHCSSPL LLPSLRISLL  120
GVGEENMRLS CNGCRVLRKG CGDSCSIRPC LQWIKSPDAQ SNATVFLAKF YGRAGLLSLV  180
NAAPQHLRPA VFRSLLYEAC GRIVNPIYGS VGLLWSGNWN MCQAAVEAVL KGAPIVKISS  240
DEAAADTPSP AHLHKAAYDI RHVAASSSSD KPGRLKKRTS ASSAAAAAAA ATTTTACSNK  300
KSKKAAPDDD HQQQEVSAAS DHHHLHVVEP MDSDDAEAAG SHVSQAEQST HSEREAEQSI  360
HNEREAEQSI HNERESEQST HDEQQVEEKP QEQMGLDLTL GFVPIPAQCV PRPAPDAGDA  420
GCSITGTGWT AHDPAFRFL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012568012.1	3e-83	LOB domain-containing protein 41
TrEMBL	F2DDE6	3e-85	F2DDE6_HORVV; Predicted protein
STRING	MLOC_58304.1	5e-86	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127