PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06797.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 947aa    MW: 100603 Da    PI: 8.8846
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06797.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2353.6e-11432488155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a +k++g
  Zmw_sc06797.1.g00020.1.am.mk 432 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDMEEKAARAYDLASLKYWG 488
                                   78*******************433.44555535555.77*****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.3E-9432488IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-13432497IPR016177DNA-binding domain
CDDcd000182.13E-15432495No hitNo description
SMARTSM003803.6E-19433502IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-11433496IPR001471AP2/ERF domain
PROSITE profilePS5103216.608433496IPR001471AP2/ERF domain
PROSITE profilePS510329.98514645IPR001471AP2/ERF domain
SMARTSM003804.4E-5520651IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-6619645IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 947 aa     Download sequence    Send to blast
MDEAKRRYRQ LRGFWSRFSV AASREKIERK GPELQSVRYD RHHPSKPHAT FFPAHQPTAH  60
LPPELTQLIS PHLARSDTDR SRPSPFKHAQ LLYPGRVPDH CAVSSAMIDL SSSLLPTTSA  120
TTSSPSGPAG GPRPRYEMTS NSSQNVSTCS TGGSDAAVAG GSWLGFSLSP HHMVASMDAA  180
AGGADNGVQQ HYGGGLYYPP VTSSPAPFCY ALGSGQESVV TQAAGANGGG FYPGLSSMPL  240
RSDGSLCITE ALRSGEEEQH HGVVASLASP KLEDFLGTGP AMAMSLNNST GLYYGGDHDH  300
SAYLQPLQCA MIPGATAHDV YGHASMVDER SAAAIAASWF VARGVGGYDV NSTGVDAALV  360
PAAACHPLAL SMSSGSGSQT SCVTMQMSAH TDPVAEYIAM EGSKKRGSTD RGAGQRQTVH  420
RKSIDTFGQR TSQYRGVTRH RWTGRYEAHL WDNSCRKEGQ TRKGRQGGYD MEEKAARAYD  480
LASLKYWGPS THINFSLEDY REELEEMKKM TRQEYVAHLR RHHQHGRWQA RIGRVSGNKD  540
LYLGTFSTCS TLPLPVIAHV LHVPAPVRVS VLVTFRKAGS PQSAGSFACS IDRSRFARLT  600
PTAVKDRCDC RSVVVACVST QDEAAEAYDV AAIKFRGLNA VTNFDITRYD VEKIMESSTL  660
LPSELVRRRK DGDAGTAAAA ITAGDDTAVA NAAAALVHAG STALDWKIQA AAAALPAPAR  720
TDEPSAQEQN HELLASEVYS AFSAQHVIVS VDADNAHGNA GAHVSNASSL STSVNNSREQ  780
SLDRGGLFAK PVVSAASKLS CPPLPLGSWV SPSPVSARPA MSVAHLPMFA AWTDAALTDR  840
LPSIPVRFSG SSARSNSPNF SRARVTPPGR AIPAAQALIS EALSCSAKLA ALLGTVSVRD  900
PRRARRLATP GGEDGGLTGP RPRPRLYSGG LDVRFTTGAS LAPPSRS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796942.10.0AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A1E5VRG80.0A0A1E5VRG8_9POAL; AP2-like ethylene-responsive transcription factor ANT
STRINGPavir.J24038.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133