PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06780.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MIKC_MADS
Protein Properties Length: 482aa    MW: 54696 Da    PI: 9.7291
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06780.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.63.3e-2883133151
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                   k ien++nrqvtfskRrng+lKKA E+SvLCdaev v++fss gkly+++s
  Zmw_sc06780.1.g00030.1.am.mk  83 KLIENSTNRQVTFSKRRNGLLKKAREISVLCDAEVGVVVFSSAGKLYDFCS 133
                                   569**********************************************96 PP
2K-box58.92.1e-20160228169
                         K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                                   yq++sgk l+++k++ l+ e++++kke++n+q e+Rhl+GedL+sL+ keL  + ++L+++l++  +k 
  Zmw_sc06780.1.g00030.1.am.mk 160 YQTNSGKILWDEKHKILSAEIDRVKKENDNMQIELRHLKGEDLNSLQPKELIMIDEALDNGLTNLNDKL 228
                                   79999999*******************************************************998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.90375135IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-4175134IPR002100Transcription factor, MADS-box
CDDcd002651.05E-4076169No hitNo description
SuperFamilySSF554557.19E-2976184IPR002100Transcription factor, MADS-box
PROSITE patternPS00350077131IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-287797IPR002100Transcription factor, MADS-box
PfamPF003193.2E-2585131IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-2897112IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-28112133IPR002100Transcription factor, MADS-box
PfamPF014865.3E-11172227IPR002487Transcription factor, K-box
PROSITE profilePS512979.46173262IPR002487Transcription factor, K-box
PfamPF119093.7E-50333470IPR020874NAD(P)H-quinone oxidoreductase, subunit N
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009817Biological Processdefense response to fungus, incompatible interaction
GO:0010258Biological ProcessNADH dehydrogenase complex (plastoquinone) assembly
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0009535Cellular Componentchloroplast thylakoid membrane
GO:0009941Cellular Componentchloroplast envelope
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016655Molecular Functionoxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MQHRDPKAPS SAFLFPPWRS PLLLAHLHHP SLPTPLHRHH QPSRSSKSRL HSEKGRREEA  60
NHLSCWERAC CERRMGRGKT EIKLIENSTN RQVTFSKRRN GLLKKAREIS VLCDAEVGVV  120
VFSSAGKLYD FCSPKTSCVP CRACSAPFVL PLLSKILEKY QTNSGKILWD EKHKILSAEI  180
DRVKKENDNM QIELRHLKGE DLNSLQPKEL IMIDEALDNG LTNLNDKLRQ QDIALSGSMR  240
DLELGYHADR DFEAQMPITF RVQPSWTKQL PPTQPRSMWS PAAAARTVSS PALSTPPFRL  300
GAARRGRVTM PPPARSTLFD FVGGDLVKPD LGKWLDDVEE HKALAIYPPH EGGYEGRYLN  360
RLKRQGYYFL DLTARGLGDP ETTLTKIHPV CPPSLGRQPK ARWYFPPEVD YRLSLLHPDA  420
KGLVVWVIEA KVLSKAELQF LAILPDLRPK VRVIAECGNW RNFVWKPLKQ IAGIEPDPDA  480
EQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6hum_N4e-283334688143NAD(P)H-quinone oxidoreductase subunit N
6nbq_N4e-283334688143NAD(P)H-quinone oxidoreductase subunit N
6nbx_N4e-283334688143NAD(P)H-quinone oxidoreductase subunit N
6nby_N4e-283334688143NAD(P)H-quinone oxidoreductase subunit N
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP894322