PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc06757.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 1597aa MW: 174437 Da PI: 8.5568

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc06757.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	34.1	4.5e-11	14	56	15	56
HHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 15 LeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++F +++p + +r +L++ +gL+ +qVk+WFqN+R+ k Zmw_sc06757.1.g00010.1.am.mk 14 MHRCFFItCPHPIEVQRNQLSQLTGLDGNQVKFWFQNKRTHVK 56 55555544*******************************9766 PP
2	START	77.5	3.4e-25	75	292	2	206
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv...dsgealrasgvvdmvlallveellddkeqWdet 75 +a +a ++lv++a+++ p+W ++ e + +++ + f+ ++ ++ea ra +vv ++ ve ++ ++++ Zmw_sc06757.1.g00010.1.am.mk 75 IARDAVRDLVTLASSNGPLWICVPggslETLSMMDYARAFAWPGGdmgLNMEATRANAVVMLDCKSIVEAFMVAE-RYKTF 154 6789999***************999988889999999977666999*************9999999999.99999 PP -S.......EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSE CS START 76 la.......kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvv 143 ++ ++ + s+g ga +lm+ + +++sp vp ++ +f+Ry++ l+ g +ivd+Sv ++ + Zmw_sc06757.1.g00010.1.am.mk 155 FPgiitgatTDKVFNWPSNGdagydGAMVLMSVDVAFPSPFVPvKKCTFLRYCKMLEHGAVAIVDISVVDCEG--I---FY 230 99999555544555555666*****************************************99988888..4...89 PP E-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 144 RaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++ + pSg+liep + +kvt +ehv +++ +h+l++ +sgl +ga++wv + rqc++ Zmw_sc06757.1.g00010.1.am.mk 231 KCCKKPSGLLIEPFRPNSCKVTAIEHVQVQDTGIHELFKEC-SSGLLFGARRWVMSMARQCAR 292 999********************************96.689*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	0.0013	3	62	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.13E-9	12	59	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-9	12	59	IPR009057	Homeodomain-like
Pfam	PF00046	1.4E-8	14	56	IPR001356	Homeobox domain
CDD	cd00086	7.86E-7	18	59	No hit	No description
PROSITE profile	PS50071	10.997	19	58	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	33	56	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	20.046	65	295	IPR002913	START domain
SuperFamily	SSF55961	4.4E-15	68	292	No hit	No description
CDD	cd08875	6.28E-68	72	291	No hit	No description
SMART	SM00234	0.0028	74	292	IPR002913	START domain
Pfam	PF01852	2.1E-17	75	292	IPR002913	START domain
SuperFamily	SSF55961	2.47E-5	329	490	No hit	No description
Gene3D	G3DSA:3.40.50.300	1.3E-5	1413	1468	IPR027417	P-loop containing nucleoside triphosphate hydrolase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1597 aa Download sequence Send to blast
MQQGRRDCNG VTEMHRCFFI TCPHPIEVQR NQLSQLTGLD GNQVKFWFQN KRTHVKPSSE 60 PVFVPQDDAR KLTEIARDAV RDLVTLASSN GPLWICVPGG SLETLSMMDY ARAFAWPGGD 120 MGLNMEATRA NAVVMLDCKS IVEAFMVAER YKTFFPGIIT GATTDKVFNW PSNGDAGYDG 180 AMVLMSVDVA FPSPFVPVKK CTFLRYCKML EHGAVAIVDI SVVDCEGIFY KCCKKPSGLL 240 IEPFRPNSCK VTAIEHVQVQ DTGIHELFKE CSSGLLFGAR RWVMSMARQC ARIRDVTNVS 300 SSSKSGSAMG RSTLEKMADT LLANFVAGII GLPAEDWIIR CREGDEDDVV KIVLKRNGDG 360 TDTATVCASA SFKLPVPMRR AFTLLKNNNL RGRWDALVKG SSIKDEVRVA NGVGDDDSIS 420 VLHVKLDTAG GKETKMILQN SSYDASGSLL VYASLDKQLM TDMIVNPGGN QDISDIPLFP 480 SGIFLVPVPD AAQPTSAVGD AGEIVVTVGS QIVTKVAPGT EAPELSAPAL SSVLKIMSDN 540 IRNVIDTLVN SDPVLQGERG GPALVEAATE SRNQDLRRVS TSFGRLHHGP RTSTADGGIK 600 QRIPVLHPAA HEHVYPGRNA VHKDVMDACP RNRVTSAQRS RRADAGKALK TRCARQDHIQ 660 GAPLPVRAPG KRAAGTICYC ARFPTRETVR TTTATRPICG TAPQRRARAF VSYAALFPFP 720 AAHRPADGAA SVPLVGKRVG GSASDVLWWL SSLMMRRRRR KRRVHVHVGL ERIRFALPEE 780 VRRRPPPDLV APGCVTERKD TVTEGRMHVP CRLSPVREER GSVASDLNAR AGGRPERRRR 840 VALQLDGSSS ISTHGEDFPG QTKDDAWGVM PALALLHLGS TVGGWISAFL CSLLSIGKGA 900 GLPRSGDWLE LPLKNKRHLN SSDVAGFVKV KETAPLKLAD LCDSLAMEEE QKASSFPDVP 960 KDIPIATKSL TIRTTAAGCG SGSDRSNPIS PALSLTPHLY SPSPPSSAFV SALQSPYISP 1020 RILEPPVPPA AQQPHHDSKA AGVSAATTAA QSPASRSNGS HSEDNDAPSA SRTPPSERYD 1080 SSGIDAAKIS DGGGGVGPLP PRVSFSFPVP RVSFTRGSVA SPSSNAKLRS CDVYIGYHGN 1140 GGLSRFCKWL KSELELQGIA SFVADRAKYS DTQSHEIADR IICSVAFGVV VVRMSSFLNP 1200 FSLEEIRFFA QKKNLVPILF DTEPSEIAGL FDGKMEDKEG KEAFEGLMRC HEFKLEANES 1260 NSRSCVTRTV TLLRSKLGRK NLAEKESEVS EGLPFPRNRH FVGREKELSE IEGLFFGSTV 1320 DIREVDCPRG SITNDRSSGV SDGFADEESD SARTSNARYI NMEMRKCKEP TLEAWIDPVI 1380 ELSSTKGQGL QKQRSKHRRS RFRCNSKSNG SANVICINGS SGIGKTELAL EFAYSAEAEK 1440 ERGRFRSFEE QEFDAFQRSE PPAVQLKAVD MVFFIKKTAL PLAIDSFMTF SRCGSALELL 1500 KVCTNVLEEV EKSYASRMQD WNRGSLCWRK KLQPNHRVDE VVWQEVTLLK ATLLETRAKL 1560 LLRGGLFDTE CPYCLSEMLR NGSDERWMLE SAEVTFI

Sequence ? help Back to Top

Protein Sequence Length: 1597 aa Download sequence Send to blast

MQQGRRDCNG VTEMHRCFFI TCPHPIEVQR NQLSQLTGLD GNQVKFWFQN KRTHVKPSSE  60
PVFVPQDDAR KLTEIARDAV RDLVTLASSN GPLWICVPGG SLETLSMMDY ARAFAWPGGD  120
MGLNMEATRA NAVVMLDCKS IVEAFMVAER YKTFFPGIIT GATTDKVFNW PSNGDAGYDG  180
AMVLMSVDVA FPSPFVPVKK CTFLRYCKML EHGAVAIVDI SVVDCEGIFY KCCKKPSGLL  240
IEPFRPNSCK VTAIEHVQVQ DTGIHELFKE CSSGLLFGAR RWVMSMARQC ARIRDVTNVS  300
SSSKSGSAMG RSTLEKMADT LLANFVAGII GLPAEDWIIR CREGDEDDVV KIVLKRNGDG  360
TDTATVCASA SFKLPVPMRR AFTLLKNNNL RGRWDALVKG SSIKDEVRVA NGVGDDDSIS  420
VLHVKLDTAG GKETKMILQN SSYDASGSLL VYASLDKQLM TDMIVNPGGN QDISDIPLFP  480
SGIFLVPVPD AAQPTSAVGD AGEIVVTVGS QIVTKVAPGT EAPELSAPAL SSVLKIMSDN  540
IRNVIDTLVN SDPVLQGERG GPALVEAATE SRNQDLRRVS TSFGRLHHGP RTSTADGGIK  600
QRIPVLHPAA HEHVYPGRNA VHKDVMDACP RNRVTSAQRS RRADAGKALK TRCARQDHIQ  660
GAPLPVRAPG KRAAGTICYC ARFPTRETVR TTTATRPICG TAPQRRARAF VSYAALFPFP  720
AAHRPADGAA SVPLVGKRVG GSASDVLWWL SSLMMRRRRR KRRVHVHVGL ERIRFALPEE  780
VRRRPPPDLV APGCVTERKD TVTEGRMHVP CRLSPVREER GSVASDLNAR AGGRPERRRR  840
VALQLDGSSS ISTHGEDFPG QTKDDAWGVM PALALLHLGS TVGGWISAFL CSLLSIGKGA  900
GLPRSGDWLE LPLKNKRHLN SSDVAGFVKV KETAPLKLAD LCDSLAMEEE QKASSFPDVP  960
KDIPIATKSL TIRTTAAGCG SGSDRSNPIS PALSLTPHLY SPSPPSSAFV SALQSPYISP  1020
RILEPPVPPA AQQPHHDSKA AGVSAATTAA QSPASRSNGS HSEDNDAPSA SRTPPSERYD  1080
SSGIDAAKIS DGGGGVGPLP PRVSFSFPVP RVSFTRGSVA SPSSNAKLRS CDVYIGYHGN  1140
GGLSRFCKWL KSELELQGIA SFVADRAKYS DTQSHEIADR IICSVAFGVV VVRMSSFLNP  1200
FSLEEIRFFA QKKNLVPILF DTEPSEIAGL FDGKMEDKEG KEAFEGLMRC HEFKLEANES  1260
NSRSCVTRTV TLLRSKLGRK NLAEKESEVS EGLPFPRNRH FVGREKELSE IEGLFFGSTV  1320
DIREVDCPRG SITNDRSSGV SDGFADEESD SARTSNARYI NMEMRKCKEP TLEAWIDPVI  1380
ELSSTKGQGL QKQRSKHRRS RFRCNSKSNG SANVICINGS SGIGKTELAL EFAYSAEAEK  1440
ERGRFRSFEE QEFDAFQRSE PPAVQLKAVD MVFFIKKTAL PLAIDSFMTF SRCGSALELL  1500
KVCTNVLEEV EKSYASRMQD WNRGSLCWRK KLQPNHRVDE VVWQEVTLLK ATLLETRAKL  1560
LLRGGLFDTE CPYCLSEMLR NGSDERWMLE SAEVTFI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	755	762	RRRRRKRR
2	756	762	RRRRKRR