PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc06747.1.g00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 845aa MW: 92623.2 Da PI: 7.6224 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.8 | 1.8e-18 | 25 | 82 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le++++++++p+ +r++L +++ +++ +q+kvWFqNrR +ek+ Zmw_sc06747.1.g00060.1.sm.mkhc 25 YVRYTPEQVEALERVYNECPKPTSLRRQQLIRECsilsNIEPKQIKVWFQNRRCREKQ 82 6789****************************************************97 PP | |||||||
2 | START | 160.6 | 1.2e-50 | 174 | 381 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakae 80 +aee+++e+++ka+ + +Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d+ W +++++++ Zmw_sc06747.1.g00060.1.sm.mkhc 174 IAEETLAEFMSKATGTVVNWVQMVGMKPGPDSIGIIAVSHNSRGVAARACGLVSLEPT-KVAEILKDRVSWYRDCRRVD 251 68999*****************************************************.7777777777********** PP EEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEE CS START 81 tlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgil 153 +l vi +g g+++l++++++a+++l+ Rdf+++Ry+ +l +g++vi+++S++ + p s +++RaellpSg+l Zmw_sc06747.1.g00060.1.sm.mkhc 252 ILHVIPTGngGTIELIYMQTYAPTTLAEpRDFWTLRYTSCLDDGSLVICERSLTKSTGGPLgpnSLNFIRAELLPSGYL 330 ***********************999866******************************9999999************* PP EEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 154 iepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204 i+p+++g+s + +v+hvdl++ ++++++r+l++s + ++k+++a+l++ + Zmw_sc06747.1.g00060.1.sm.mkhc 331 IRPCEGGGSMIYIVDHVDLDACSVPEVIRPLYESPKILAQKMTLAALRHIR 381 ***********************************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.37 | 19 | 83 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-16 | 21 | 87 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.94E-17 | 23 | 85 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.00E-16 | 24 | 84 | No hit | No description |
Pfam | PF00046 | 5.5E-16 | 25 | 82 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-18 | 26 | 82 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 4.89E-6 | 76 | 115 | No hit | No description |
PROSITE profile | PS50848 | 24.456 | 164 | 364 | IPR002913 | START domain |
CDD | cd08875 | 8.14E-66 | 168 | 384 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 2.7E-20 | 173 | 355 | IPR023393 | START-like domain |
SMART | SM00234 | 5.0E-42 | 173 | 383 | IPR002913 | START domain |
Pfam | PF01852 | 9.2E-49 | 174 | 381 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.06E-34 | 174 | 383 | No hit | No description |
Pfam | PF08670 | 6.6E-29 | 708 | 845 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 845 aa Download sequence Send to blast |
MAAVASRERR RLSPASAPHV DTGKYVRYTP EQVEALERVY NECPKPTSLR RQQLIRECSI 60 LSNIEPKQIK VWFQNRRCRE KQRKESSRLQ TVNRKLSAMN KLLMEENDRL QKQVSGLVND 120 NGLMRNRLHK PSAATTDTSC ESVVTSGQPH LQQNPPVPHP PQRDANIPAG LLAIAEETLA 180 EFMSKATGTV VNWVQMVGMK PGPDSIGIIA VSHNSRGVAA RACGLVSLEP TKVAEILKDR 240 VSWYRDCRRV DILHVIPTGN GGTIELIYMQ TYAPTTLAEP RDFWTLRYTS CLDDGSLVIC 300 ERSLTKSTGG PLGPNSLNFI RAELLPSGYL IRPCEGGGSM IYIVDHVDLD ACSVPEVIRP 360 LYESPKILAQ KMTLAALRHI RQIAFESSGE IPYGAGRQPA VLRTISQRLS RGFNDAVSGF 420 PDDGWSLLSR EGSEDITISV KSSPNKLDGF HVSTSPFFSA FGGGIMCAKA SMLIQNVPPA 480 LLVRFLREHR SQWADPGVDA YSAASLRTGP YAVPGLGSCG FTGSQAMVPL AETIDHEESL 540 EIVRFEGNGF GHNDVVLSRD MLLLQLCSGA DESVPGACAQ LVYAPIDDGF SDDAQLLPSG 600 FRVVPLDGKV DVLLATRTLD LASALEVGSG ETLHVSKDTA GLDNMRSVLT IAFQFSFENH 660 LRESVAVMAR QYVRSVMTSV QRVAMAISPH IGTQIKMKHQ PGSPEAQTLA RWISRSYKVH 720 AGAEIRWSDS KDADSPLKLL WKHSDAILCC SLKASPMLMF ANSAGLDILE TTLINIQDMP 780 LETVLGDEGQ KALVLELPKI MNQYSWRLAA LPFLSCQQGF TNLPTGVCKS SMGRLVSYEQ 840 AAVWK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004963232.1 | 0.0 | homeobox-leucine zipper protein HOX33 | ||||
Swissprot | A2ZMN9 | 0.0 | HOX33_ORYSI; Homeobox-leucine zipper protein HOX33 | ||||
Swissprot | Q2QM96 | 0.0 | HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33 | ||||
TrEMBL | K3Z3T3 | 0.0 | K3Z3T3_SETIT; Uncharacterized protein | ||||
STRING | Si021201m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP374 | 38 | 197 |
Publications ? help Back to Top | |||
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