PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06737.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 678aa    MW: 73823.8 Da    PI: 9.8014
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06737.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.71e-1315111399
                                   EE-..-HHHHT..T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                            B3   3 kvltpsdvlks..grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                                   kvl+p++ ++s  + l+++   a++   gg  ++++  ++    g++W v +   + +++ +l++GW eFv a+g+ +  f
  Zmw_sc06737.1.g00040.1.am.mk  15 KVLLPPSFSSSscHKLRISDALARRLddGGAGAGGTAFVVSPVGGKVWHVAV--GRDDDGAFLGRGWPEFVAAHGIGASWF 93 
                                   667777766666678999999999999866656776777777899*******..*************************** PP

                                   EEEEE-SSSEE..EEEEE-S CS
                            B3  80 vvFkldgrsefelvvkvfrk 99 
                                   vvF++dg  ++ l+vk+f++
  Zmw_sc06737.1.g00040.1.am.mk  94 VVFRHDG--GGVLTVKAFDT 111
                                   ****765..77789*99987 PP
2B3444e-141472301097
                                   HHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                            B3  10 vlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                                    ++++ + +p kf+++h   g   ++s +  l ++ g+ W+v++  +  sg+++l++GW++F  +ng++eg+ ++++++g+
  Zmw_sc06737.1.g00040.1.am.mk 147 GFTEK-MAIPLKFVRTHltaG---TNSDMPALLNLGGKYWRVEVE-KDVSGSVFLSTGWSRFLASNGINEGEALLLRYEGN 222
                                   45554.99*********8643...35567899************4.44456799*************************** PP

                                   SEE..EEEEE CS
                            B3  88 sefelvvkvf 97 
                                   + f  +vkvf
  Zmw_sc06737.1.g00040.1.am.mk 223 MVF--TVKVF 230
                                   *99..88877 PP
3B3474.8e-15297388186
                                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.......-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.......rsWevkliyrkksgryvltkGWkeFvkangL 74 
                                   ++k+++++++l+++ + l  +f++++g ++++ +tlt ++ s         sW+v+ +++ +s   + ++GW +F+++n+L
  Zmw_sc06737.1.g00040.1.am.mk 297 WIKKEIKAYALSNH-VPLAGRFCKAIGFSEPCVITLTTTTYSTasggaaaGSWKVRGCVDSHSTCKLGGRGWTSFCRDNRL 376
                                   78999********9.***********99999987777777666889***********999999889999************ PP

                                   -TT-EEEEEE-S CS
                            B3  75 kegDfvvFkldg 86 
                                   +egD+++F  +g
  Zmw_sc06737.1.g00040.1.am.mk 377 REGDVCTFNIVG 388
                                   ********9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010193.8E-813112IPR003340B3 DNA binding domain
PfamPF023623.9E-1115111IPR003340B3 DNA binding domain
CDDcd100176.78E-915110No hitNo description
Gene3DG3DSA:2.40.330.109.5E-1417113IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-1320114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.82759112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-18134235IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-19135238IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.183137233IPR003340B3 DNA binding domain
SMARTSM010193.7E-13140233IPR003340B3 DNA binding domain
CDDcd100171.88E-14140230No hitNo description
PfamPF023621.4E-11149230IPR003340B3 DNA binding domain
SuperFamilySSF1019361.79E-12293400IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.7E-13295400IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.014298400IPR003340B3 DNA binding domain
PfamPF023621.8E-9298388IPR003340B3 DNA binding domain
PROSITE profilePS508639.756347400IPR003340B3 DNA binding domain
CDDcd100171.66E-6347384No hitNo description
PROSITE profilePS508637.401639678IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MGPTGDHRAI SRHLKVLLPP SFSSSSCHKL RISDALARRL DDGGAGAGGT AFVVSPVGGK  60
VWHVAVGRDD DGAFLGRGWP EFVAAHGIGA SWFVVFRHDG GGVLTVKAFD TSSCLHEFSR  120
RLIVAANGSD AAIGPRRQQF IKVLLRGFTE KMAIPLKFVR THLTAGTNSD MPALLNLGGK  180
YWRVEVEKDV SGSVFLSTGW SRFLASNGIN EGEALLLRYE GNMVFTVKVF GLDGCEKSFN  240
KPRDEGVTIS WVQDAPSSSP AGQREGRRDK RQAPSVAETK AKRPRSNCTY EIGPPSWIKK  300
EIKAYALSNH VPLAGRFCKA IGFSEPCVIT LTTTTYSTAS GGAAAGSWKV RGCVDSHSTC  360
KLGGRGWTSF CRDNRLREGD VCTFNIVGPT LWHVDIARRS STRHEPTAPN LSSSSSSVAM  420
HNSFTSSARA IPPEFVKNHM ADAQTNGELA VLLRLAGTKF RRVELETDPS GNVLLLRLEG  480
SMAFTVKVLR PDGCQKSFES RKEHRRILDL EQSGQAKMNT QQEDSSGNKR KNMEDEPETG  540
PGSSDVVQSI TARSLIFRPH KLAGRHVSER AVDCTAVVDL NPPESMVNTG KRKIVEDTIR  600
LRGRAAVLVE EGDQRQCTHA DVHVDMIDFT GAKEITLRTL TNDGAGRSWP VLGVAYKSGC  660
ELTYRLGWLA FFKGNALK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825226.11e-111putative B3 domain-containing protein Os04g0347400
STRINGPavir.Ga02236.1.p1e-111(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187