PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06718.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 578aa    MW: 63408.2 Da    PI: 8.9262
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06718.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.31.7e-07288310223
                                   EETTTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                   +CpdCg++F r+++L+ H++  H
  Zmw_sc06718.1.g00020.1.am.mk 288 PCPDCGETFVRQESLQMHQSIrH 310
                                   7******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.5E-5286306IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.556287311IPR007087Zinc finger, C2H2
PROSITE patternPS000280287310IPR007087Zinc finger, C2H2
SuperFamilySSF563991.47E-14312523No hitNo description
Gene3DG3DSA:3.90.228.102.7E-9315521IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MGTVGGGLEQ RRRVVASGPA LKQPVCSYHN NRLVCSGSGR SWPIMSTLVL ALLFSFWWCL  60
LATIDDNQRL AWRGRGWNQE PKKQHHCHHM LSMPLARGSQ LQLASCSRVP TMVEPAAARN  120
STATKKSKVK QRQCTEPPPE SPSHRLVALK SLFSCRNSHG HAPDSSCKGT SSKKQQLACS  180
SAPSICHQLK DNEQVKVKPP TDAAGDPCKR RASVSGSSER RVKKPLSEVS DNKLRQGGGG  240
SSSSSSTGGG SFRAGMQLRR LSGCYECHMV VDPIFRDSSS MRATTICPCP DCGETFVRQE  300
SLQMHQSIRH AVCELGSDDT SRNIIEIIFQ SSWLKKQSPV CRVERILKVH NSARTLARFE  360
DYREAVKAKA KKKHHPRCTA DGNELLRFHC AALGCALGLH GATHLCGACP TCAIIRDGFF  420
DNSDGIRTMA TSGRAHDAAV PEAGTTEERS RAMLVCRVIA GRVKRPSNHH DDDQQQEQEE  480
VRAEADGEEE EEYESVAGSA GVYSNMEELL VFNSKAILPC FVRRRMGNMA RSDSPVSRRI  540
VLSFLDFLNS GRYSLSLSLL AIPLPPDPCF IAAVVGTW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824982.11e-157uncharacterized protein LOC112900370
TrEMBLA0A2S3IBV11e-155A0A2S3IBV1_9POAL; Uncharacterized protein
STRINGGRMZM2G136494_P011e-154(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880