PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc06690.1.g00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 178aa MW: 20234.7 Da PI: 5.8963 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.3 | 8.5e-21 | 77 | 130 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe+++++ e+++eLA++lg+ rqV vWFqNrRa++k Zmw_sc06690.1.g00030.1.am.mk 77 KKRRLTPEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWK 130 5678*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 133.2 | 9.7e-43 | 76 | 167 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 ekkrrl+ eqv++LE+sFeee+kLeperK+elar+Lg+ prqvavWFqnrRAR+ktkqlE++y++Lk+aydal+++++ L Zmw_sc06690.1.g00030.1.am.mk 76 EKKRRLTPEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLETEYDRLKAAYDALAADHQGLL 156 69******************************************************************************* PP HD-ZIP_I/II 82 keveeLreelk 92 +++ +Lr++++ Zmw_sc06690.1.g00030.1.am.mk 157 ADNGNLRAQVA 167 *******9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.47E-19 | 71 | 135 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.285 | 72 | 132 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-19 | 75 | 136 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.5E-18 | 77 | 130 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.93E-17 | 77 | 133 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-22 | 78 | 139 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.3E-6 | 103 | 112 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 107 | 130 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.3E-6 | 112 | 128 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.2E-12 | 132 | 167 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MDPGRMGFDS GGVRRGEGPQ MLLFGGGGSA NSNGFIRGVP MAVLGRDDDA RVGKRPFFTT 60 HEELMEEEYY DEQAPEKKRR LTPEQVQMLE RSFEEENKLE PERKTELARR LGMAPRQVAV 120 WFQNRRARWK TKQLETEYDR LKAAYDALAA DHQGLLADNG NLRAQVATSI YASSMCFE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 124 | 132 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973433.1 | 3e-90 | homeobox-leucine zipper protein HOX5 | ||||
Swissprot | Q6ZA74 | 5e-74 | HOX5_ORYSJ; Homeobox-leucine zipper protein HOX5 | ||||
Swissprot | Q9XH36 | 5e-74 | HOX5_ORYSI; Homeobox-leucine zipper protein HOX5 | ||||
TrEMBL | B4FLB1 | 3e-94 | B4FLB1_MAIZE; HB transcription factor | ||||
STRING | Si014228m | 1e-89 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2609 | 38 | 87 |
Publications ? help Back to Top | |||
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