PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc06667.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GATA | ||||||||
Protein Properties | Length: 255aa MW: 27626.5 Da PI: 8.4771 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.2 | 4.6e-18 | 167 | 201 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + kTp+WR gp g+ktLCnaCG++y++ +l Zmw_sc06667.1.g00010.1.sm.mk 167 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 201 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.4E-16 | 161 | 211 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 9.1E-14 | 165 | 199 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 11.385 | 165 | 197 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.71E-14 | 165 | 225 | No hit | No description |
CDD | cd00202 | 9.39E-14 | 166 | 213 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 167 | 192 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 6.7E-16 | 167 | 201 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MAPEWEAIDL GMGLVHHHTT STTTMPPASS SINHYFYAGG AGGHTAAPSS SSFNLSFADD 60 FSIPAVPSEE AAELEWLSNF VDDSYPDMPS YYTPEAIAAV QQQQQNNTNN GKPPSVTSSR 120 TKRSRPTSAQ QAWQRSKNKQ NLPAAPAPGG GGDDTNSRSE DGGVRRCTHC ASEKTPQWRT 180 GPLGPKTLCN ACGVRYKSGR LVPEYRPAAS PTFVLTQHSN SHRKVMELRR QKELIHLRGT 240 SSSASSSPFR DYGLC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008658338.1 | 3e-68 | GATA transcription factor 2 | ||||
Swissprot | O49741 | 2e-57 | GATA2_ARATH; GATA transcription factor 2 | ||||
TrEMBL | A0A0A9GYF6 | 2e-75 | A0A0A9GYF6_ARUDO; GATA transcription factor | ||||
STRING | GRMZM2G113098_P01 | 1e-67 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4621 | 29 | 55 |
Publications ? help Back to Top | |||
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