PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06667.1.g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 255aa    MW: 27626.5 Da    PI: 8.4771
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06667.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.6e-18167201135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  Zmw_sc06667.1.g00010.1.sm.mk 167 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 201
                                   *******************************9885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-16161211IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.1E-14165199IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.385165197IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.71E-14165225No hitNo description
CDDcd002029.39E-14166213No hitNo description
PROSITE patternPS003440167192IPR000679Zinc finger, GATA-type
PfamPF003206.7E-16167201IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAPEWEAIDL GMGLVHHHTT STTTMPPASS SINHYFYAGG AGGHTAAPSS SSFNLSFADD  60
FSIPAVPSEE AAELEWLSNF VDDSYPDMPS YYTPEAIAAV QQQQQNNTNN GKPPSVTSSR  120
TKRSRPTSAQ QAWQRSKNKQ NLPAAPAPGG GGDDTNSRSE DGGVRRCTHC ASEKTPQWRT  180
GPLGPKTLCN ACGVRYKSGR LVPEYRPAAS PTFVLTQHSN SHRKVMELRR QKELIHLRGT  240
SSSASSSPFR DYGLC
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008658338.13e-68GATA transcription factor 2
SwissprotO497412e-57GATA2_ARATH; GATA transcription factor 2
TrEMBLA0A0A9GYF62e-75A0A0A9GYF6_ARUDO; GATA transcription factor
STRINGGRMZM2G113098_P011e-67(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46212955
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]