PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc06591.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 644aa MW: 68773.9 Da PI: 8.1791

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc06591.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	83.9	1.5e-26	420	478	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YY+Ct++ +Cpv+k+v+r+ ed +v+++tY++ Hnh+ Zmw_sc06591.1.g00050.1.am.mk 420 SDGCQWRKYGQKMPKGNPCPRAYYQCTMSaDCPVHKQVQRCVEDRTVLITTYQNYHNHP 478 7*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.7E-29	404	480	IPR003657	WRKY domain
SuperFamily	SSF118290	4.58E-25	411	480	IPR003657	WRKY domain
PROSITE profile	PS50811	27.072	414	480	IPR003657	WRKY domain
SMART	SM00774	2.7E-28	419	479	IPR003657	WRKY domain
Pfam	PF03106	8.0E-22	421	478	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 644 aa Download sequence Send to blast
MSISMRLAFP APATAPASPP RLRVRAAGTG ASPHVSRVAA LRRETDALRG CASLPLKPMP 60 LGAGQPCRRR GDAAVCLSSP YMSAHTMQWI SAGATAGTQG GAILSLAIAG YLAFQHITRV 120 GEPRLLARSR LMDSLATGLE RSKNDGAAER ERSPSPAASP PVTLGSDVGA GAEERREIDF 180 FEREKKSAGI DHAPADADAA LDDLRIVKDD LTLNIRRRRK SASEKSSIDD HDGDYHDNSN 240 EGDGRKGNEV DDELELTKAE LRCVKEENER LRNLISHANA AYRSLQAHIV RMMEQQQLNV 300 DPEKKEQDAS LLSFGTAPDS GVDSAPSPGK NNLGLGSIAP EMMPLPTFDH LRRHLREGGS 360 GTKEAPLPQH FPQGWLPGPD KVPEYLPAKA PEPVPAAGPA GTMRKVRVEV RTRSEAPLIS 420 DGCQWRKYGQ KMPKGNPCPR AYYQCTMSAD CPVHKQVQRC VEDRTVLITT YQNYHNHPLP 480 PAARAMASQT AEAASMLLSG SMPTADGSLM AGSNFLARCA MLPCSSGVAS ISASEPFPTV 540 TLDLTHTSTQ PPRPVPDQLQ AALAEAARPV QLPQPHDKLS AVLAAAGVKA TDGGVLADTF 600 SAAAAXXXXX XXXAAPCSRW RAAATIIAVV KRTRLGETAV DNLT

Sequence ? help Back to Top

Protein Sequence Length: 644 aa Download sequence Send to blast

MSISMRLAFP APATAPASPP RLRVRAAGTG ASPHVSRVAA LRRETDALRG CASLPLKPMP  60
LGAGQPCRRR GDAAVCLSSP YMSAHTMQWI SAGATAGTQG GAILSLAIAG YLAFQHITRV  120
GEPRLLARSR LMDSLATGLE RSKNDGAAER ERSPSPAASP PVTLGSDVGA GAEERREIDF  180
FEREKKSAGI DHAPADADAA LDDLRIVKDD LTLNIRRRRK SASEKSSIDD HDGDYHDNSN  240
EGDGRKGNEV DDELELTKAE LRCVKEENER LRNLISHANA AYRSLQAHIV RMMEQQQLNV  300
DPEKKEQDAS LLSFGTAPDS GVDSAPSPGK NNLGLGSIAP EMMPLPTFDH LRRHLREGGS  360
GTKEAPLPQH FPQGWLPGPD KVPEYLPAKA PEPVPAAGPA GTMRKVRVEV RTRSEAPLIS  420
DGCQWRKYGQ KMPKGNPCPR AYYQCTMSAD CPVHKQVQRC VEDRTVLITT YQNYHNHPLP  480
PAARAMASQT AEAASMLLSG SMPTADGSLM AGSNFLARCA MLPCSSGVAS ISASEPFPTV  540
TLDLTHTSTQ PPRPVPDQLQ AALAEAARPV QLPQPHDKLS AVLAAAGVKA TDGGVLADTF  600
SAAAAXXXXX XXXAAPCSRW RAAATIIAVV KRTRLGETAV DNLT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-18	407	482	2	76	WRKY transcription factor 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025807048.1	1e-118	WRKY transcription factor 42-like isoform X1
TrEMBL	A0A0E0L5U9	1e-121	A0A0E0L5U9_ORYPU; Uncharacterized protein
STRING	Pavir.Ca00949.1.p	1e-124	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12695	27	34