PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc06586.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 424aa MW: 46820.6 Da PI: 9.7448

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc06586.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.3	1.9e-50	153	280	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrF P+deelv++yL kkv++++ ++ evd++ ePw+Lp ++k + +ewyfFs rd+kyatg+r+nratk+g Zmw_sc06586.1.g00010.1.am.mk 153 LPPGFRFYPSDEELVCHYLYKKVANERAAQ-GTLVEVDLHAREPWELPDAAKLTASEWYFFSFRDRKYATGSRTNRATKTG 232 79***********************776.78***********87788899********************* PP NAM 82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatgkd+ev s +++++g++ktLvfy+grap+g+k+ Wvmhe+rl Zmw_sc06586.1.g00010.1.am.mk 233 YWKATGKDREVRSPaTRAVIGMRKTLVFYRGRAPNGVKSGWVMHEFRL 280 *********977788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-59	150	298	IPR003441	NAC domain
PROSITE profile	PS51005	58.144	153	299	IPR003441	NAC domain
Pfam	PF02365	9.2E-28	154	280	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MPSLRRMDNL RGCASSNVRP IRRTGRARAS SSCATSIHGN TSSVDRSISA LRNLPPKPAG 60 SIQLMGGRPG WQRDARFRDK TWGSSALLSQ RSLFQPSQLA LHRYLSPAAA SLVPLQKQST 120 AGNQPHSRYT KWPLVAPLDR DGGMGLREIE STLPPGFRFY PSDEELVCHY LYKKVANERA 180 AQGTLVEVDL HAREPWELPD AAKLTASEWY FFSFRDRKYA TGSRTNRATK TGYWKATGKD 240 REVRSPATRA VIGMRKTLVF YRGRAPNGVK SGWVMHEFRL DSPHTPPKED WVLCRVLEKR 300 KDGEQDNGGA GSSSSPPFAG SSQAAVVPPD QPVMVDADAY CADHQTARSP VGFAPPQDQG 360 PLLDATIWQY SSVLDHQYSQ EVSSSLTMMT GLGSRFDGFF YDTGFEDVMA ANVEGVGFPQ 420 GWMG

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MPSLRRMDNL RGCASSNVRP IRRTGRARAS SSCATSIHGN TSSVDRSISA LRNLPPKPAG  60
SIQLMGGRPG WQRDARFRDK TWGSSALLSQ RSLFQPSQLA LHRYLSPAAA SLVPLQKQST  120
AGNQPHSRYT KWPLVAPLDR DGGMGLREIE STLPPGFRFY PSDEELVCHY LYKKVANERA  180
AQGTLVEVDL HAREPWELPD AAKLTASEWY FFSFRDRKYA TGSRTNRATK TGYWKATGKD  240
REVRSPATRA VIGMRKTLVF YRGRAPNGVK SGWVMHEFRL DSPHTPPKED WVLCRVLEKR  300
KDGEQDNGGA GSSSSPPFAG SSQAAVVPPD QPVMVDADAY CADHQTARSP VGFAPPQDQG  360
PLLDATIWQY SSVLDHQYSQ EVSSSLTMMT GLGSRFDGFF YDTGFEDVMA ANVEGVGFPQ  420
GWMG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-48	144	305	1	174	Stress-induced transcription factor NAC1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824637.1	1e-142	protein CUP-SHAPED COTYLEDON 1-like
TrEMBL	A0A2T7CXR4	1e-141	A0A2T7CXR4_9POAL; Uncharacterized protein
STRING	Pavir.Gb00655.1.p	1e-140	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP697	38	166