PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc06584.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | DBB | ||||||||
Protein Properties | Length: 218aa MW: 22598.2 Da PI: 5.2474 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20 | 1.5e-06 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ + + ++ fC ++ lC+ C H+ H+ Zmw_sc06584.1.g00010.1.am.mk 4 QCDVCAAEAASVFCCADEAALCDACDRRVHSAnklagkHR 43 7**************************9996566777776 PP | |||||||
2 | zf-B_box | 30.1 | 9.8e-10 | 63 | 104 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 ++ C+ ++ek+ lfC++++ lC+dC ++ H Ht Zmw_sc06584.1.g00010.1.am.mk 63 PPLCDICQEKRGLLFCKEDRAILCRDCDVSVHTAseltmrHT 104 689*****************************5566777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.84 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.0E-11 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.48E-6 | 3 | 47 | No hit | No description |
Pfam | PF00643 | 1.6E-5 | 4 | 44 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.111 | 61 | 108 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.0E-14 | 61 | 108 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.7E-8 | 62 | 104 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.17E-8 | 64 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MKVQCDVCAA EAASVFCCAD EAALCDACDR RVHSANKLAG KHRRFSLLGP TPSSSGSPHQ 60 QPPPLCDICQ EKRGLLFCKE DRAILCRDCD VSVHTASELT MRHTRFLLTG VRLSTEPAAC 120 PAPPSEDENT SSSNFCCSAG DAAATSNGGG SDSSSISEYL TKTLPGWHVE DFLVDEAAAA 180 ASATTAGASY HQSGAGTAYS ESRLLGTLLV AAVLAGPG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634023.1 | 2e-91 | B-box zinc finger protein 20 isoform X2 | ||||
Swissprot | Q9LQZ7 | 3e-55 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A2XVZ8 | 3e-90 | A2XVZ8_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q7XR92 | 3e-90 | Q7XR92_ORYSJ; AP2-EREBP transcription factor | ||||
STRING | OS04T0540200-01 | 6e-91 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2392 | 36 | 79 |