PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06562.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 358aa    MW: 39296.8 Da    PI: 5.3697
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06562.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.88.8e-19134187356
                                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   k+++++ eq+++Le+ Fe ++++  e++++LA+ lgL+ rqV vWFqNrRa++k
  Zmw_sc06562.1.g00040.1.am.mk 134 KKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWK 187
                                   456899***********************************************9 PP
2HD-ZIP_I/II132.12e-42133225193
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   ekkrrls eqv++LE+sFe e+kLeperK++lar+LglqprqvavWFqnrRAR+ktkqlE+dy+aL+++ydal+ ++++L+
  Zmw_sc06562.1.g00040.1.am.mk 133 EKKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDALRLDHDALR 213
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLreelke 93 
                                   +++++L +e+ke
  Zmw_sc06562.1.g00040.1.am.mk 214 RDKDALLAEIKE 225
                                   *******99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.38E-19127191IPR009057Homeodomain-like
PROSITE profilePS5007117.297129189IPR001356Homeobox domain
SMARTSM003892.1E-18132193IPR001356Homeobox domain
CDDcd000869.14E-17134190No hitNo description
PfamPF000464.4E-16134187IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-19136196IPR009057Homeodomain-like
PRINTSPR000311.4E-5160169IPR000047Helix-turn-helix motif
PROSITE patternPS000270164187IPR017970Homeobox, conserved site
PRINTSPR000311.4E-5169185IPR000047Helix-turn-helix motif
PfamPF021836.2E-17189230IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MHDRDGNGPL ALRPFISTQR TAPSLATTES KPQRGTREGR EGLTPHCTVL SQLRRFLRSS  60
GYMVLAMDHG KEQRRAVRQK WRRSSCPTAR PRGGSPSLPP VNNPDDDGYG GVGMEAEGDA  120
EEEMMACGGG GGEKKRRLSV EQVRALERSF EVENKLEPER KARLARDLGL QPRQVAVWFQ  180
NRRARWKTKQ LERDYAALRH SYDALRLDHD ALRRDKDALL AEIKELKAKL GDEETTASFT  240
SVKAEPAAFD EPPTAGTGSS ESDSSAVLND ADPAGATPPT ELPPGPEIQQ GTLLGSAAAA  300
VAGTAAARQA ELLFHGSFLK VEEDDTGFLD DDEPCGGFFA VEQPPPMVWW TEPMEHWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158164ERKARLA
2181189RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957072.11e-147homeobox-leucine zipper protein HOX4
SwissprotQ6K4981e-126HOX4_ORYSJ; Homeobox-leucine zipper protein HOX4
SwissprotQ9XH371e-126HOX4_ORYSI; Homeobox-leucine zipper protein HOX4
TrEMBLK3ZW401e-145K3ZW40_SETIT; Uncharacterized protein
STRINGSi030822m1e-146(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30093482
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]