PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc06510.1.g00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 269aa MW: 28349.8 Da PI: 7.2931 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00029 | 90 | 112 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ CgksF + L H tH Zmw_sc06510.1.g00030.1.am.mk 90 FKCSVCGKSFGSYQALGGHKTTH 112 89********9999998888887 PP | |||||||
2 | zf-C2H2 | 12.5 | 0.00045 | 164 | 186 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F++ L H r+H Zmw_sc06510.1.g00030.1.am.mk 164 HRCSICHKEFPTGQALGGHKRKH 186 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-4 | 90 | 115 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 6.7E-13 | 90 | 114 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0087 | 90 | 112 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.87E-9 | 90 | 112 | No hit | No description |
PROSITE profile | PS50157 | 12.986 | 90 | 117 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 92 | 112 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.87E-9 | 159 | 186 | No hit | No description |
Pfam | PF13912 | 1.3E-12 | 163 | 188 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.058 | 164 | 186 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.043 | 164 | 186 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 166 | 186 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MTTAMELLHA ALPEQQRHEQ EEEVALTTSS SGDEGAHVPQ GWAKRKRSRR QRSEEENLAL 60 CLLMLSRGGN HRVQAPPPPA EPLTAAAAEF KCSVCGKSFG SYQALGGHKT THRAKQPARP 120 ATSGPVVEDA VPISAIPPTV AELREPATSS TAASSDGTTA SRVHRCSICH KEFPTGQALG 180 GHKRKHYDGG VGNSAAASAE LPAVAAAAAE TSEVGSSGNG SSAARAFDLN LPALPEFVWR 240 CAKAGTMWEE DEEVQSPLAF KKPRLLMTA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002463836.1 | 1e-110 | zinc finger protein 1 | ||||
Swissprot | Q42430 | 1e-103 | ZFP1_WHEAT; Zinc finger protein 1 | ||||
TrEMBL | A0A0Y0SZ20 | 1e-122 | A0A0Y0SZ20_9POAL; C2H2-type zinc finger protein | ||||
STRING | Sb01g007170.1 | 1e-109 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |