PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc06488.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 1214aa MW: 128304 Da PI: 9.3632

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc06488.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.9	2.7e-06	835	856	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f ++ C++Gd C +aHg Zmw_sc06488.1.g00020.1.am.mk 835 PCPDFKKGAGCRRGDMCEYAHG 856 8****88**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00939	1.4E-79	105	376	IPR001898	Sodium/sulphate symporter
TIGRFAMs	TIGR00785	4.6E-82	122	378	IPR001898	Sodium/sulphate symporter
CDD	cd00625	1.12E-27	142	490	No hit	No description
Pfam	PF00939	1.9E-28	382	495	IPR001898	Sodium/sulphate symporter
SuperFamily	SSF48403	8.55E-8	660	748	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	9.3E-9	667	750	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	11.983	669	740	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	9.271	705	740	IPR002110	Ankyrin repeat
SMART	SM00356	4.1E-4	830	857	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.859	835	858	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.1E-4	835	857	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	87	866	889	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.925	866	890	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006814	Biological Process	sodium ion transport
GO:0055085	Biological Process	transmembrane transport
GO:0016020	Cellular Component	membrane
GO:0005215	Molecular Function	transporter activity
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1214 aa Download sequence Send to blast
MLPTPHAITT VHPLKPHTSL HSRTSCAAAA TAAMAAATVA SPLTCHHLGQ RLHTRVPSLS 60 FPLRRRSSSS IAASASKPIS HSHSLPSKPL TSDVPRRALP PGAAITPLLI SIATGVLVWF 120 IPAPSGVPRN AWQLLAIFLS TIVGIITQPL PLGAVALLGL GAAVLTRTLT FAAAFSAFGD 180 PIPWLIALAF FFARGFIKTG LGKRVAYAFV SAFGGSSLGL GYALVFAEAI LAPAIPSVSA 240 RAGGIFLPLV KSLCEACGSR SGDGTERKLG AWLMLTCFQT SVVSSAMFLT AMAANPLSAN 300 LTAGTIGQGI GWTLWAKAAI VPGLLSLVLV PLILYVIYPP EMKSSPDAPR LAKEQLAKMG 360 PMTKQETIMA GTLLLTFVGG LGLSWQLSFG VLVLLYFYSH YFFASGAAHI GAMFTAFLSV 420 AKALGTPPLF AAMVMSFLSN LMGGLTHYGI GSAPVFYGAG YVPLAQWWGY GFLISVVNII 480 IWLGAGGFWW KMIGLCPLDA TWRARARARR WNIRLPSRHE WNGRIGCGGA RSLRATGSCG 540 RDDRDPGAAN PPGRVSGQLH PVVRMGATFF FTVPILPLPV AEARRGPFVA DEFTFPLPRC 600 LLFSGISSNT FPDRTPQAMA ETSDAAAISA RLLELTADDD AASLGDLLAA HPSLADEPSP 660 WYFPARGAEP LTPLMVAAAY GSVSCIDVLL SPPYLADPKR TTPSSLSTSL HLAAAGGAPS 720 APAAVSRLLA AGADPTLLDR LQRRPSDLVT LPPNSLALKN HLLSLLGARK EWPPDPSLPD 780 IKNGAYASDD FRMYSFKVRA CSRAYSHDWT ECPFVHPGEN ARRRDPRKFH YSCVPCPDFK 840 KGAGCRRGDM CEYAHGVFES WLHPAQYRTR LCKDGVGCAR RVCFFAHTPE ELRPLYVSMG 900 SRGGMEMAAA MGMGMPSPGA SFTPPLSPSG AGSGVTGGWP QPSVPALCLP GSAGNLHLSR 960 PRTSLSARSM AVDELLAAAD YDGLGSPASV RSARGKTLVP SNLDDLFSAE IAGAAASRSP 1020 RYADQGGATF SPTRKAAMLN QFQQQQSLLS PRTTAAGVNP EPVSPMSSRL LAALAQREKM 1080 QQQTLRSMSS RDISSGASIL VGSPVGSSWS KWGVQSGSGT PDWGTDEEEL GRLKRSSSFE 1140 LQSGANGDEP DLSWVNTLVK EPTPEKASTN TTTAKQSIGI LGQAASNDCI NGEEATAGVI 1200 GGWLEQLQLD EMVV

Sequence ? help Back to Top

Protein Sequence Length: 1214 aa Download sequence Send to blast

MLPTPHAITT VHPLKPHTSL HSRTSCAAAA TAAMAAATVA SPLTCHHLGQ RLHTRVPSLS  60
FPLRRRSSSS IAASASKPIS HSHSLPSKPL TSDVPRRALP PGAAITPLLI SIATGVLVWF  120
IPAPSGVPRN AWQLLAIFLS TIVGIITQPL PLGAVALLGL GAAVLTRTLT FAAAFSAFGD  180
PIPWLIALAF FFARGFIKTG LGKRVAYAFV SAFGGSSLGL GYALVFAEAI LAPAIPSVSA  240
RAGGIFLPLV KSLCEACGSR SGDGTERKLG AWLMLTCFQT SVVSSAMFLT AMAANPLSAN  300
LTAGTIGQGI GWTLWAKAAI VPGLLSLVLV PLILYVIYPP EMKSSPDAPR LAKEQLAKMG  360
PMTKQETIMA GTLLLTFVGG LGLSWQLSFG VLVLLYFYSH YFFASGAAHI GAMFTAFLSV  420
AKALGTPPLF AAMVMSFLSN LMGGLTHYGI GSAPVFYGAG YVPLAQWWGY GFLISVVNII  480
IWLGAGGFWW KMIGLCPLDA TWRARARARR WNIRLPSRHE WNGRIGCGGA RSLRATGSCG  540
RDDRDPGAAN PPGRVSGQLH PVVRMGATFF FTVPILPLPV AEARRGPFVA DEFTFPLPRC  600
LLFSGISSNT FPDRTPQAMA ETSDAAAISA RLLELTADDD AASLGDLLAA HPSLADEPSP  660
WYFPARGAEP LTPLMVAAAY GSVSCIDVLL SPPYLADPKR TTPSSLSTSL HLAAAGGAPS  720
APAAVSRLLA AGADPTLLDR LQRRPSDLVT LPPNSLALKN HLLSLLGARK EWPPDPSLPD  780
IKNGAYASDD FRMYSFKVRA CSRAYSHDWT ECPFVHPGEN ARRRDPRKFH YSCVPCPDFK  840
KGAGCRRGDM CEYAHGVFES WLHPAQYRTR LCKDGVGCAR RVCFFAHTPE ELRPLYVSMG  900
SRGGMEMAAA MGMGMPSPGA SFTPPLSPSG AGSGVTGGWP QPSVPALCLP GSAGNLHLSR  960
PRTSLSARSM AVDELLAAAD YDGLGSPASV RSARGKTLVP SNLDDLFSAE IAGAAASRSP  1020
RYADQGGATF SPTRKAAMLN QFQQQQSLLS PRTTAAGVNP EPVSPMSSRL LAALAQREKM  1080
QQQTLRSMSS RDISSGASIL VGSPVGSSWS KWGVQSGSGT PDWGTDEEEL GRLKRSSSFE  1140
LQSGANGDEP DLSWVNTLVK EPTPEKASTN TTTAKQSIGI LGQAASNDCI NGEEATAGVI  1200
GGWLEQLQLD EMVV

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP823	37	126