PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06430.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 132aa    MW: 14344.1 Da    PI: 10.7905
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06430.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.6e-1852100355
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   y+GVr +  +g+Wv+eIr+p++   + r++lg+f+ +e+Aa+a++ a+ +++g
  Zmw_sc06430.1.g00010.1.am.mk  52 YRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFDNPEMAARAHDVAAVAIKG 100
                                   9****998.**********843...6*********************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.9E-3651114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-3251109IPR001471AP2/ERF domain
PROSITE profilePS5103222.48451108IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2251109IPR016177DNA-binding domain
PfamPF008473.2E-115299IPR001471AP2/ERF domain
CDDcd000182.31E-2852110No hitNo description
PRINTSPR003672.6E-105263IPR001471AP2/ERF domain
PRINTSPR003672.6E-107490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MEQEQVSSTP QMSDGTTCSS NSSSSGSLNA PSSPSSSCSK KRPRRDLKHQ TYRGVRMRTW  60
GKWVSEIREP RKKSRIWLGT FDNPEMAARA HDVAAVAIKG RAAHLNFPEL AHELPRAASA  120
APKDVQAAAA LA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-19481081172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164544.11e-63ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ72e-42ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A3B6DIC83e-62A0A3B6DIC8_WHEAT; Uncharacterized protein
STRINGTraes_2BL_984787AC0.18e-65(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]