PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc06380.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bZIP

Protein Properties

Length: 182aa MW: 20935.7 Da PI: 10.3731

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc06380.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.4	4.8e-11	31	88	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr +r NR +A rs +RK +i+eLe kv++L++e ++L +l +l+ + l ++ Zmw_sc06380.1.g00030.1.es.mkhc 31 KRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSAQLTMLQRDSTGLATQ 88 899*******************************************999887766655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.7E-18	27	91	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	7.0E-10	28	80	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.829	29	92	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.11E-12	31	82	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.6E-12	31	88	No hit	No description
CDD	cd14703	2.18E-17	32	83	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MEFANGEFTE AEKKKIMANE RLAEIALTDP KRVKRILANR QSAARSKERK MRYIQELEHK 60 VQVLQTEATT LSAQLTMLQR DSTGLATQNN ELKIRLQAME QQAQLRDALN EALTAEVHRL 120 KVATGEITTD GNRMPKSLQQ QMNSQMLQLQ QLQIQQQQQQ SNQAQQSQQQ PRQQQQQPEK 180 SA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822599.1	5e-88	transcription factor RF2a-like
Swissprot	Q6S4P4	2e-53	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A0A9MTU5	3e-90	A0A0A9MTU5_ARUDO; Uncharacterized protein
TrEMBL	A0A1E5W1H4	3e-88	A0A1E5W1H4_9POAL; Transcription factor RF2b
STRING	Pavir.Fb02374.1.p	1e-87	(Panicum virgatum)
STRING	Sb07g025270.1	4e-87	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6247	36	50

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]