PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06308.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 350aa    MW: 37596.2 Da    PI: 5.229
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06308.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding476e-1590137148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT+eEd++lv     +G  +W+ +++  g+ R++k+c++rw +yl
  Zmw_sc06308.1.g00030.1.am.mk  90 KGPWTAEEDQKLVGFLLTHGHCCWRVVPKLAGLLRCGKSCRLRWTNYL 137
                                   79******************************99************97 PP
2Myb_DNA-binding54.13.5e-17146187447
                                   S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                    + +E++l +d+++qlG++ W++Ia++++ gRt++++k++w+++
  Zmw_sc06308.1.g00030.1.am.mk 146 LSDDEEKLVIDLHAQLGNR-WSKIAARLP-GRTDNEIKNHWNTH 187
                                   589****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-2081138IPR009057Homeodomain-like
PROSITE profilePS5129412.90585137IPR017930Myb domain
SuperFamilySSF466891.99E-2687184IPR009057Homeodomain-like
SMARTSM007173.0E-1189139IPR001005SANT/Myb domain
PfamPF002491.8E-1390137IPR001005SANT/Myb domain
CDDcd001675.03E-992137No hitNo description
PROSITE profilePS5129426.946138192IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-24139192IPR009057Homeodomain-like
SMARTSM007173.9E-15142190IPR001005SANT/Myb domain
CDDcd001671.89E-12147188No hitNo description
PfamPF002495.7E-15147187IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MAPSETGSHV RRAPPSLAAT WGAAPAGSLV FVSINPSPCA APSLPGTETG SSEQAIRHCA  60
AREAAPGENE RAVYCCTSWQ PCCDKVGVKK GPWTAEEDQK LVGFLLTHGH CCWRVVPKLA  120
GLLRCGKSCR LRWTNYLRPD LKRGLLSDDE EKLVIDLHAQ LGNRWSKIAA RLPGRTDNEI  180
KNHWNTHIRK KLLRMGIDPV THQPLPQAPA SPVQEQKEHA EPPPPPQPQP QQAQEQPLRT  240
DGEAQQEVEA EGRQDLPLIQ PDEIPAPPPA ASSVSSASGS VFSPSCSSSA SASAASGVEA  300
TEWPEPMYLF GMDGIMDAGW GGLFLGDGGV SLDPFDQYPG GGFDQGDDWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C6e-29901924105C-Myb DNA-Binding Domain
1msf_C6e-29901924105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813949.11e-114protein ODORANT1-like
SwissprotQ9C7U73e-81MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A0A9ESB71e-113A0A0A9ESB7_ARUDO; Uncharacterized protein
TrEMBLA0A2S3HKQ71e-113A0A2S3HKQ7_9POAL; Uncharacterized protein
STRINGPavir.Da01229.1.p1e-114(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]