PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc06169.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 320aa MW: 35394.6 Da PI: 6.8565

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc06169.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	107.8	1.6e-33	156	246	2	73
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................. 65 ++++drhski T++g RdRR+Rls+ +a+ fF+Lqd+LGfdk+skt++WLl q+kpai+ l +t Zmw_sc06169.1.g00020.1.am.mk 156 PVRTDRHSKIRTAQGVRDRRMRLSVGVARDFFALQDRLGFDKASKTVNWLLIQSKPAIDSLCDTsmpgapvfgptvvkgkk 236 6899************************************************************44444444444444444 PP TCP 66 ..ssssasec 73 +sss+ c Zmw_sc06169.1.g00020.1.am.mk 237 geGSSSSPGC 246 4323333233 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	32.499	158	216	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.7E-31	158	221	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MARSAYASST ASYPRRTTSW TWHGQAITEV EVNELEASSS SSMALAKADR NPPHRHHHHH 60 QCVYQQEQPL IPNPTAAFLM PATASWDEYG GQIFPAADMY NQQETLEAVL RQAVTAPRQQ 120 DHHPAVEREL ESSRDGAAPA VDDGVAPAAV VPQRRPVRTD RHSKIRTAQG VRDRRMRLSV 180 GVARDFFALQ DRLGFDKASK TVNWLLIQSK PAIDSLCDTS MPGAPVFGPT VVKGKKGEGS 240 SSSPGCFKDT RERVRSRGAL DPAAAFMEDR GGSVLDWNMS EAAATAPAAM ELTQPMEELE 300 YYQYYQLEEM MRCNNGVLPR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973503.2	7e-93	transcription factor TB1
TrEMBL	A0A1E5VGN2	8e-81	A0A1E5VGN2_9POAL; Uncharacterized protein
STRING	Si015230m	3e-77	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4052	31	72