PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc06155.1.g00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Dof | ||||||||
Protein Properties | Length: 294aa MW: 30534.9 Da PI: 8.4848 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119.8 | 1e-37 | 66 | 122 | 6 | 62 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 l+cprCdstntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+n k+s Zmw_sc06155.1.g00060.1.am.mk 66 LRCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNTKRS 122 78***************************************************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 9.9E-32 | 66 | 120 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.385 | 66 | 120 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 1.0E-22 | 67 | 115 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 68 | 104 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MVFSSLPIFL DPPSWGQMQV QQQQQQPLHC LLGGGSDHQH LMPPPSGLAP ADTAASAPAP 60 GGPGTLRCPR CDSTNTKFCY FNNYSLSQPR HFCKACRRYW TRGGALRNVP VGGGCRRNTK 120 RSSKKSSRQG GVAAAGGAAA ASSSSSTTST STTPTTTTTS SAAAAEVLAS MQAQLPQFGL 180 PPAAAAAALE ASLEGYQYHH YLPLQMQQQF LQQGLQGYHF ADGDSGGVFA DGFPRGVASG 240 LLAQLAAVKM EEHNNGGAVA AHEQSYWPSS GGGGNGWPTE FLPGFSSSSS GNVV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008668091.1 | 1e-110 | dof zinc finger protein DOF2.2 isoform X1 | ||||
TrEMBL | A0A1D6KE34 | 1e-113 | A0A1D6KE34_MAIZE; Dof zinc finger protein DOF2.2 | ||||
STRING | Pavir.Ca02598.1.p | 1e-109 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |