PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc06135.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | SBP | ||||||||
Protein Properties | Length: 843aa MW: 91055.5 Da PI: 10.5812 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 69.6 | 5.8e-22 | 189 | 235 | 2 | 48 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 C v+gC+adls++++yhrrhkvCe+hsk+pvv+v+g+e rfCqqCsr Zmw_sc06135.1.g00050.1.am.mk 189 CAVDGCKADLSKCRDYHRRHKVCEAHSKTPVVVVAGREMRFCQQCSR 235 **********************************************9 PP | |||||||
2 | SBP | 49 | 1.6e-15 | 281 | 313 | 46 | 78 |
TSSEEETTT--SS--S-STTTT-------S--- CS SBP 46 CsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 s fh+l efDe+krsCr+rL++hn+rrrk+q+ Zmw_sc06135.1.g00050.1.am.mk 281 GSTFHQLAEFDETKRSCRKRLDGHNRRRRKPQP 313 699***************************987 PP | |||||||
3 | SRF-TF | 73.3 | 2e-23 | 790 | 839 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+ rqv fskRr+g++KKA+EL LCda+va+i+fs+ g+lye++s Zmw_sc06135.1.g00050.1.am.mk 790 RIEDRVSRQVRFSKRRKGLFKKAFELAELCDAQVALIVFSPAGRLYEFAS 839 8***********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 7.8E-27 | 182 | 232 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 22.187 | 186 | 311 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.62E-20 | 187 | 235 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.6E-16 | 189 | 235 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 7.8E-27 | 281 | 298 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.9E-8 | 282 | 310 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.89E-12 | 282 | 316 | IPR004333 | Transcription factor, SBP-box |
SMART | SM00432 | 2.0E-30 | 781 | 840 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.287 | 781 | 841 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.34E-31 | 783 | 840 | No hit | No description |
SuperFamily | SSF55455 | 1.57E-23 | 783 | 841 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-24 | 783 | 803 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-23 | 790 | 837 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-24 | 803 | 818 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-24 | 818 | 839 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 843 aa Download sequence Send to blast |
MEEGKFQLSL QVRTAPPVPG PSGLAFVAAK SLLVAIHAPA AAPSISPPPR RFITSAQLAR 60 PSLFDELELL HLRPRLPSIA VCSIWYCASG SRRRSSTVAA TVGRCSQENA RGMRVTGRGR 120 KPDASPPPNS DLTKGRTCRR RGRRARRSVA MDWDLKVPAS WDLAELEHDA GAAAAPAAGP 180 SGVHRCPSCA VDGCKADLSK CRDYHRRHKV CEAHSKTPVV VVAGREMRFC QQCSRDTAGD 240 QCSRGLCTVS PFDFSAQRSA ALLCTSDSIS LLMNSRLESG GSTFHQLAEF DETKRSCRKR 300 LDGHNRRRRK PQPDPMTSAN FITRQQGTRF SPFTTPRQDA TWPGIIKTEG SPYYSHQLPL 360 GTSNNRQQHF GVGSSSAYTK EGRRFPFLHQ EGEISFTTGM VLDAASSAVC QPLLKTVAAP 420 PETGGGGGSK MFSDGLTRVL DSDCALSLLS APANSSNIDV TRMVRPTEQV PLLAQQQPLL 480 SGLQFGTASW FPRPHQPVPA PATGAVATTT VAPTGMETEH HHQQMNAVLG GGAGDAGEMN 540 YNGMFHVAGE GTFSWQDVIQ RRAAASLRTS CICMRGEART GRARARAPAT HSSARMSSTE 600 CLGAPATHSL QSKNEACGPR RGPASQALDP RDGGEVGAVA NHGARSRGLH CALAPRAQRC 660 RGTWLLTALV GLLAFWGGGA HPLSAKAEPS SPLLLLPSTT FVGIPRLQSR FAPTPFMPCR 720 PARPSTRAQQ ARAHCKVAAI CMTKDMDAEE ARNPELRQRE EEARAGGEGD GRNEMKKAAK 780 KKRGRVEMRR IEDRVSRQVR FSKRRKGLFK KAFELAELCD AQVALIVFSP AGRLYEFASS 840 NSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj0_A | 8e-16 | 189 | 235 | 6 | 52 | squamosa promoter-binding protein-like 12 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 293 | 310 | KRSCRKRLDGHNRRRRKP |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1755 | 37 | 95 |