PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc06132.1.g00070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | YABBY | ||||||||
Protein Properties | Length: 198aa MW: 20920.9 Da PI: 7.9535 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 87.3 | 4.1e-27 | 20 | 198 | 5 | 134 |
YABBY 5 ssseqvCyvqCnfCntilavs.............vPstslfkvvtvrCGhCtsllsvnlakas...qllaaeshldeslke 69 s +eq+Cyv+Cn C+tilavs vP +slfk+vtvrCGhCt+llsvnl+ +a ++l+ ++ Zmw_sc06132.1.g00070.1.am.mk 20 SPTEQLCYVHCNCCDTILAVSdhrcgaerappvgVPCSSLFKTVTVRCGHCTNLLSVNLRGLLlppAGPPAANQLNFGVQS 100 578****************8777777777777779*************************998665556788888777777 PP YABBY 70 e.....................lleelkveeenlksnvekeesastsvssekl.....senedeevp..rvppvir..... 117 + l+e+ + ++++ n ++++as+ ++++ + +++ e+p vp v+r Zmw_sc06132.1.g00070.1.am.mk 101 SllsptsphglldelalqapslLMEQASANLSSITGNSYSSSCASNVPAMSMQpaaakPVQHEPELPakSVPSVNRrkdld 181 688889999*99999999998766777777777777777777777666655447776644444444311345577644444 PP YABBY 118 PPekrqrvPsaynrfik 134 PekrqrvPsaynrfik Zmw_sc06132.1.g00070.1.am.mk 182 SPEKRQRVPSAYNRFIK 198 7***************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 8.7E-30 | 21 | 198 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MMSSSSSSTA AFPLDHLAPS PTEQLCYVHC NCCDTILAVS DHRCGAERAP PVGVPCSSLF 60 KTVTVRCGHC TNLLSVNLRG LLLPPAGPPA ANQLNFGVQS SLLSPTSPHG LLDELALQAP 120 SLLMEQASAN LSSITGNSYS SSCASNVPAM SMQPAAAKPV QHEPELPAKS VPSVNRRKDL 180 DSPEKRQRVP SAYNRFIK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155220.1 | 3e-84 | protein YABBY 4-like isoform X1 | ||||
Swissprot | A2X7Q3 | 5e-70 | YAB4_ORYSI; Protein YABBY 4 | ||||
Swissprot | Q6H668 | 5e-70 | YAB4_ORYSJ; Protein YABBY 4 | ||||
TrEMBL | A0A3B6QIL1 | 7e-83 | A0A3B6QIL1_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453P643 | 7e-83 | A0A453P643_AEGTS; Uncharacterized protein | ||||
STRING | Traes_6DL_59DB06B9F.1 | 1e-83 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |
Publications ? help Back to Top | |||
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