PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06089.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 303aa    MW: 32984.8 Da    PI: 7.7119
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06089.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94e-1761108148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT+eEd++lv ++k +G g+W++ ++  g+ R++k+c++rw +yl
  Zmw_sc06089.1.g00010.1.am.mk  61 KGAWTKEEDQRLVAYIKAHGEGCWRSLPNAAGLQRCGKSCRLRWINYL 108
                                   79********************************************97 PP
2Myb_DNA-binding569.4e-18114158147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg++T eEd+ ++++++++G++ W++Ia +++ gRt++++k++w+++
  Zmw_sc06089.1.g00010.1.am.mk 114 RGNFTDEEDDTIIKLHQMFGNK-WSLIAGRLP-GRTDNEIKNYWNTH 158
                                   89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-2452111IPR009057Homeodomain-like
PROSITE profilePS5129417.17556108IPR017930Myb domain
SuperFamilySSF466895.75E-3060155IPR009057Homeodomain-like
SMARTSM007171.2E-1260110IPR001005SANT/Myb domain
PfamPF002497.2E-1561108IPR001005SANT/Myb domain
CDDcd001676.68E-1163108No hitNo description
PROSITE profilePS5129427.55109163IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-28112163IPR009057Homeodomain-like
SMARTSM007174.3E-17113161IPR001005SANT/Myb domain
PfamPF002492.9E-16114158IPR001005SANT/Myb domain
CDDcd001675.82E-13116159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEFAGRVSSV AIRDHVCRST ACRDAGGARI IVACLRTTCV AYRAREEINE SPCCEKAHTN  60
KGAWTKEEDQ RLVAYIKAHG EGCWRSLPNA AGLQRCGKSC RLRWINYLRP DLKRGNFTDE  120
EDDTIIKLHQ MFGNKWSLIA GRLPGRTDNE IKNYWNTHIK RKLLARGIDP KTHRPLNETS  180
TSAAPPSTHR QDHTARPSCS PQTSGGAGHS SDEGSAAGSM PAETSRRELD SCVDLNLSIA  240
PPQYQPAPLP GQEEEGQAAG CSTMSSSTKA TAGTTNSEKE RICLCFNDLG SQCDEGCTCG  300
SDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28611637108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977235.11e-107myb-related protein Zm38
SwissprotQ9SZP12e-84MYB4_ARATH; Transcription repressor MYB4
TrEMBLK3YEC21e-105K3YEC2_SETIT; Uncharacterized protein
STRINGSi012585m1e-106(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Schenke D,Cai D,Scheel D
    Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
    Plant Cell Environ., 2014. 37(7): p. 1716-21
    [PMID:24450952]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Zhang J, et al.
    Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis.
    Plant Sci., 2016. 248: p. 82-91
    [PMID:27181950]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  7. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]