PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc06019.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRF | ||||||||
Protein Properties | Length: 438aa MW: 46989.4 Da PI: 7.0405 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 75.3 | 6.2e-24 | 69 | 112 | 2 | 45 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Zmw_sc06019.1.g00010.1.sm.mkhc 69 LEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 112 69***************************************986 PP | |||||||
2 | QLQ | 58.5 | 2e-20 | 6 | 42 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l++KyLaan P+P++Ll +i++ Zmw_sc06019.1.g00010.1.sm.mkhc 6 GPFTPSQWIELEHQALIFKYLAANSPIPHNLLIPIRR 42 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.7E-11 | 6 | 42 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.9E-15 | 7 | 41 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.983 | 7 | 42 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.65 | 68 | 112 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.4E-20 | 70 | 111 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0061062 | Biological Process | regulation of nematode larval development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MARMRGPFTP SQWIELEHQA LIFKYLAANS PIPHNLLIPI RRSLASAYFG TSTLGWGSFQ 60 LGYSGNADLE PGRCRRTDGK KWRCSRDAVA DQKYCERHMN RGRHRSRKHV EGQPGHAAKA 120 MSAAVVAAAA SATQPGVLAA SGAGATAAGL TVNQHQQPVK NYGAGASDPC SLQYNSELMT 180 KQNQSENIQE SDNLSVLTSM NSRNNGSTFS FSKQNNPFEV TNSRPDFGLV SSESLMNSPH 240 SSLENINLLS SQSVSERQSS ASLQHFVDWP RTPAQGGIAW PDAEDIQAPR TQLSVSAPMA 300 SSELSSASTS PIHEKLILSP LKLSREYSPV GLSISANRDE AGQVQGNWML RSMGGPLGEV 360 LTKNGNAEAM NCMSAPLNLF SDCWDTSLGL DSSPVGVLQK TTFGSISSST GSSPMMENYS 420 GYDGICNPQD DLGSIVIL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004981896.1 | 0.0 | growth-regulating factor 6 | ||||
Refseq | XP_025795429.1 | 0.0 | growth-regulating factor 6-like | ||||
Swissprot | Q6AWY3 | 0.0 | GRF6_ORYSJ; Growth-regulating factor 6 | ||||
TrEMBL | A0A0A9TSP3 | 0.0 | A0A0A9TSP3_ARUDO; Uncharacterized protein | ||||
STRING | Si034822m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4290 | 35 | 68 |
Publications ? help Back to Top | |||
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