PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc05997.1.g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 167aa MW: 18707.4 Da PI: 8.8412 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.6 | 3e-10 | 113 | 160 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +hn +Er RR++i +++ L +l+P + +k Ka +L + +Y++sLq Zmw_sc05997.1.g00020.1.sm.mkhc 113 SHNLAERLRRKKISERIKLLHDLVPRC----NKVTGKAVMLDEISKYVQSLQ 160 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 4.7E-14 | 106 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.67E-13 | 107 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.087 | 109 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-7 | 113 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.87E-8 | 113 | 160 | No hit | No description |
SMART | SM00353 | 4.5E-6 | 115 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MLMIELMTIF DSLKRVEAYL DAHGGTSSQN VQMRDGFSGG VKKSKGMCEC VTLLQPMGDQ 60 QTEGSSQPER NFVEEEKRMI SPKSQIKEDS SGGDGIKEDY VHVRAKRDQP TNSHNLAERL 120 RRKKISERIK LLHDLVPRCN KVTGKAVMLD EISKYVQSLQ PSGGVLI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004981901.1 | 4e-65 | transcription factor bHLH49 | ||||
Refseq | XP_004981902.1 | 4e-65 | transcription factor bHLH49 | ||||
Refseq | XP_022678584.1 | 4e-65 | transcription factor bHLH49 | ||||
Swissprot | Q9CAA9 | 7e-29 | BH049_ARATH; Transcription factor bHLH49 | ||||
TrEMBL | A0A3L6S4S4 | 2e-63 | A0A3L6S4S4_PANMI; Transcription factor bHLH49-like | ||||
TrEMBL | K4ACS8 | 9e-64 | K4ACS8_SETIT; Uncharacterized protein | ||||
STRING | Si036685m | 1e-64 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6033 | 36 | 50 |
Publications ? help Back to Top | |||
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