PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc05979.1.g00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 171aa MW: 18854.6 Da PI: 8.8386 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.9 | 1.6e-12 | 15 | 106 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 ffk l ++++ l+lp kfa g ++ t++l +e W+v+l ++++++l++GW++ ++ +L eg + Zmw_sc05979.1.g00030.1.sm.mk 15 FFKLL--LPGMAKNELRLPAKFAGVLGDR--RDLTVRLSSEGAmPLWDVEL--VTSGDGVYLGRGWRQLARTYDLGEGHLL 89 78888..67788888********666655..777999999655599*****..999999********************** PP EEEE-SSSEE..EEEEE-S CS B3 81 vFkldgrsefelvvkvfrk 99 vF++d+ + l+v+vf+ Zmw_sc05979.1.g00030.1.sm.mk 90 VFRYDN--AAVLNVTVFDP 106 ***975..66679999986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.674 | 13 | 107 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.72E-13 | 13 | 105 | No hit | No description |
SuperFamily | SSF101936 | 7.26E-18 | 14 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-17 | 14 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.9E-9 | 15 | 105 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.5E-10 | 15 | 107 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 171 aa Download sequence Send to blast |
MEQGIADLPK AEFEFFKLLL PGMAKNELRL PAKFAGVLGD RRDLTVRLSS EGAMPLWDVE 60 LVTSGDGVYL GRGWRQLART YDLGEGHLLV FRYDNAAVLN VTVFDPSTCR KQYPRAGGAG 120 SAGAGRNAPH VNEPAPFAVT LRNCNLSTKQ NQYLVSEHCH RLGILAWRSL I |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985224.1 | 6e-47 | B3 domain-containing protein Os03g0212300 | ||||
Swissprot | Q10Q26 | 3e-38 | Y3123_ORYSJ; B3 domain-containing protein Os03g0212300 | ||||
TrEMBL | A0A0A9SID0 | 1e-60 | A0A0A9SID0_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Ia04671.1.p | 4e-47 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4748 | 32 | 64 |
Publications ? help Back to Top | |||
---|---|---|---|
|