PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05971.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 448aa MW: 48191.6 Da PI: 9.2966

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05971.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	91.7	5.4e-29	144	238	1	89
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 f+kv tpsdv+k++rlv+pk++ae++ +e++ l++ed g+ W+++++y+++s++yv+tkGW++Fvk+++L++g Zmw_sc05971.1.g00020.1.am.mk 144 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldAAANEKGLLLSFEDCAGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAG 224 89*************************9555568889************************************** PP -EEEEEE-.SS.SE CS B3 78 DfvvFkld.gr.se 89 D+v F + g+ + Zmw_sc05971.1.g00020.1.am.mk 225 DTVSFGRGaGEaAR 238 ***955344444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.3E-39	134	248	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.71E-28	141	232	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.43E-25	142	229	No hit	No description
Pfam	PF02362	5.7E-26	144	247	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.493	144	249	IPR003340	B3 DNA binding domain
SMART	SM01019	2.4E-19	144	249	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MNPPLADPRI QQASEQPSQS QPAARSLTAS HRTDAAAEAH DPPKERRGKG SRRRPKAAPR 60 REDEEEGQER EEEGDDEASH REIPFMTAAA SSSAPSASAS AASASGSALR SSDGAGASGR 120 GGGGGDGGGN DDDDVEVIEK EHMFDKVVTP SDVGKLNRLV IPKQHAEKYF PLDAAANEKG 180 LLLSFEDCAG KLWRFRYSYW NSSQSYVMTK GWSRFVKEKR LDAGDTVSFG RGAGEAARDR 240 LFIDWKRRAD VVRDPHRMPR IPLPVPSAAS PYGPWGGGAG GFFMPTSPPA TLYEHHRLRQ 300 SLDFRNVNAA APARQLLFFG SAGMPPPGPM LPPPPPPPPM HITVQPSPAV TAGLPMVLDS 360 VSLVNSPTAA SKRVRLFGVN LDNPHPGRGE SSHDANALSR RMPGWQRPSP LRLFELPHHQ 420 RNDAGEARVE SSAASSPSSS SSSKREAH

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MNPPLADPRI QQASEQPSQS QPAARSLTAS HRTDAAAEAH DPPKERRGKG SRRRPKAAPR  60
REDEEEGQER EEEGDDEASH REIPFMTAAA SSSAPSASAS AASASGSALR SSDGAGASGR  120
GGGGGDGGGN DDDDVEVIEK EHMFDKVVTP SDVGKLNRLV IPKQHAEKYF PLDAAANEKG  180
LLLSFEDCAG KLWRFRYSYW NSSQSYVMTK GWSRFVKEKR LDAGDTVSFG RGAGEAARDR  240
LFIDWKRRAD VVRDPHRMPR IPLPVPSAAS PYGPWGGGAG GFFMPTSPPA TLYEHHRLRQ  300
SLDFRNVNAA APARQLLFFG SAGMPPPGPM LPPPPPPPPM HITVQPSPAV TAGLPMVLDS  360
VSLVNSPTAA SKRVRLFGVN LDNPHPGRGE SSHDANALSR RMPGWQRPSP LRLFELPHHQ  420
RNDAGEARVE SSAASSPSSS SSSKREAH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	3e-61	139	251	3	116	B3 domain-containing transcription factor NGA1
5os9_B	3e-61	139	251	3	116	B3 domain-containing transcription factor NGA1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976592.1	1e-159	B3 domain-containing protein Os02g0683500
Swissprot	Q6EU30	1e-124	Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBL	A0A1E5V6G8	1e-161	A0A1E5V6G8_9POAL; B3 domain-containing protein
STRING	Si011823m	1e-158	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP583	37	168

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]