PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc05953.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 221aa MW: 24944.1 Da PI: 9.8977 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.7 | 9.6e-17 | 136 | 183 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd l d+v+++G g+Wk++ g++R++k+c++rw+++l Zmw_sc05953.1.g00040.1.am.mk 136 KGSWDPEEDAVLRDYVQEHGEGSWKLVQINTGLNRCGKSCRLRWHNHL 183 799*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.768 | 131 | 187 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-22 | 132 | 186 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-13 | 135 | 185 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-15 | 136 | 183 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.17E-20 | 137 | 213 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.27E-10 | 138 | 183 | No hit | No description |
PROSITE profile | PS50090 | 5.273 | 184 | 221 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-9 | 187 | 217 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 40 | 188 | 221 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 221 aa Download sequence Send to blast |
MGSLACIAHA PSPEPENSEQ TSRARIADGR KWNSRFPRPC AATPQRNFPT LQNSSISKST 60 SQHRRRLIRF PLPALGSSSL ALDPYGRARS LDGNLSFLTA DTMVKNKKEE EEKVETNSDG 120 GIDDAPAPPV APKLNKGSWD PEEDAVLRDY VQEHGEGSWK LVQINTGLNR CGKSCRLRWH 180 NHLKPHLKKG RFDDEEVEKI LYMHRLWGNK WAKMAKHQDK A |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-15 | 132 | 216 | 3 | 86 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Swissprot | A2WW87 | 4e-31 | GAM1_ORYSI; Transcription factor GAMYB |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP62080 | 2 | 2 |