PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05914.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

FAR1

Protein Properties

Length: 463aa MW: 52494.8 Da PI: 7.7059

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05914.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87.1	2.7e-27	90	178	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 fY +YA +vGFsvr+++s++sk +++i++ +fvCs+eg+++e++ +k+r++ a+ r gC+a+l+v ++ d+kw+vtkl Zmw_sc05914.1.g00010.1.sm.mk 90 FYIAYAGRVGFSVRIARSRRSKCSESIIMLRFVCSREGFSKEKRAVaGKKTRKRAASIREGCNAMLEVLRRGDNKWVVTKL 170 9************************************9998877467778888999******************* PP FAR1 82 eleHnHel 89 ++eHnHe+ Zmw_sc05914.1.g00010.1.sm.mk 171 VKEHNHEV 178 ****95 PP
2	FAR1	63	8.9e-20	212	302	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtk 80 fY +YA++vGF+ r+++s+ks ++++ ++ ++vCs++ +++ ++++ ++k+ + +r gC+a +++ ++++++w+v+k Zmw_sc05914.1.g00010.1.sm.mk 212 FYYSYASRVGFEARVRQSRKS-QDESLKMLKLVCSRHRYHSGRENNgeDTKRVHALDPSRNGCDALFEIVRKDKDVWMVSK 291 9*****************9.6777**********9999995455556677789****************** PP FAR1 81 leleHnHelap 91 l leH+Hel+p Zmw_sc05914.1.g00010.1.sm.mk 292 LILEHTHELNP 302 ******975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-25	90	178	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	5.0E-17	212	302	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MEPQVTELED DSINFWASLG VSPTVDQMPL HGVQVVEHQS QPLLAAAAAA AAVQSQSQSV 60 CKDLFPVESE SCLEPQLGME FDSGEAAKTF YIAYAGRVGF SVRIARSRRS KCSESIIMLR 120 FVCSREGFSK EKRAVAGKKT RKRAASIREG CNAMLEVLRR GDNKWVVTKL VKEHNHEVGL 180 PSRVHYIAIE TDAVIDPYVG MEFESLESAK TFYYSYASRV GFEARVRQSR KSQDESLKML 240 KLVCSRHRYH SGRENNGEDT KRVHALDPSR NGCDALFEIV RKDKDVWMVS KLILEHTHEL 300 NPEPDSRVRC VRSQGEVLVI AKNFADTHAI KEELRGMFPE RDPFISDLKK CIDGCRLEGS 360 FESGWNSVII KHGFSNIELL QSLYSIRQQW APAYTKKSFN PRNLLPLTCG NIEKVIEKYF 420 SAKIQLPVAV WQLGQAITNS YETEVQADYL TMFQMPAGEF WYQ

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MEPQVTELED DSINFWASLG VSPTVDQMPL HGVQVVEHQS QPLLAAAAAA AAVQSQSQSV  60
CKDLFPVESE SCLEPQLGME FDSGEAAKTF YIAYAGRVGF SVRIARSRRS KCSESIIMLR  120
FVCSREGFSK EKRAVAGKKT RKRAASIREG CNAMLEVLRR GDNKWVVTKL VKEHNHEVGL  180
PSRVHYIAIE TDAVIDPYVG MEFESLESAK TFYYSYASRV GFEARVRQSR KSQDESLKML  240
KLVCSRHRYH SGRENNGEDT KRVHALDPSR NGCDALFEIV RKDKDVWMVS KLILEHTHEL  300
NPEPDSRVRC VRSQGEVLVI AKNFADTHAI KEELRGMFPE RDPFISDLKK CIDGCRLEGS  360
FESGWNSVII KHGFSNIELL QSLYSIRQQW APAYTKKSFN PRNLLPLTCG NIEKVIEKYF  420
SAKIQLPVAV WQLGQAITNS YETEVQADYL TMFQMPAGEF WYQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021320512.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_021320514.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1E5VVU0	0.0	A0A1E5VVU0_9POAL; Uncharacterized protein
STRING	Sb07g004380.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967