PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05901.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB

Protein Properties

Length: 236aa MW: 26016 Da PI: 9.4841

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05901.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.2	8e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEde+lv +++ +G g+W++ ++ g+ R++k+c++rw +yl Zmw_sc05901.1.g00040.1.sm.mk 14 RGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	55.8	1.1e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++Ed+l+v+++ +lG++ W+ Ia++++ gRt++++k++w+++ Zmw_sc05901.1.g00040.1.sm.mk 67 RGNFTPDEDDLIVKLHGLLGNK-WSVIAARLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.2E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.979	9	61	IPR017930	Myb domain
SMART	SM00717	1.4E-13	13	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.91E-29	13	108	IPR009057	Homeodomain-like
Pfam	PF00249	2.1E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	4.90E-11	16	61	No hit	No description
PROSITE profile	PS51294	26.903	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-27	65	116	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	3.5E-16	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	3.43E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MGRSPCCEKA HTNRGAWTKE EDERLVAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TPDEDDLIVK LHGLLGNKWS VIAARLPGRT DNEIKNYWNT HVRKKLLSVG 120 IDPVTHRPIR QVQASSQSTP AAALKTTPRC PDLNLDLCIR PPSPFQEREE PPVIVKRELL 180 HLQGGGHGRG GGLCLGCCSS LGLNKGAADC GCGGNNQHFL GLRLGVLDFR GGLEMK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-27	13	116	26	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269\|PubMed:7920701}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822035.1	1e-116	myb-related protein Zm38-like
Swissprot	P20025	1e-110	MYB38_MAIZE; Myb-related protein Zm38
TrEMBL	A0A2S3I4H7	1e-114	A0A2S3I4H7_9POAL; Uncharacterized protein
TrEMBL	A0A2T7DAJ9	1e-114	A0A2T7DAJ9_9POAL; Uncharacterized protein
STRING	Pavir.J11802.1.p	1e-114	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Publications ? help Back to Top
Franken P,Schrell S,Peterson PA,Saedler H,Wienand U Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38. Plant J., 1994. 6(1): p. 21-30 [PMID:7920701]