PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05891.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 305aa MW: 33965.1 Da PI: 12.0586

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05891.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.2	5e-10	246	279	1	35
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35 +g+WT+eEd+llvd+++ G g+W++ ++ g + Zmw_sc05891.1.g00050.1.am.mk 246 KGPWTPEEDKLLVDYIQANGHGSWRLLPKLAG-LL 279 79***************************999.33 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.829	241	274	IPR017877	Myb-like domain
SuperFamily	SSF46689	1.87E-7	242	279	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.4E-10	245	277	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-7	246	277	IPR001005	SANT/Myb domain
CDD	cd00167	1.93E-4	248	277	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MMEPENTAGT HPHATAPVRP AASNHDATHP RLPLQRTRQR ARNSLKSAFT PPSARSESEL 60 GQAGPLSISV RATPCSFRPL LVVVGLALLH LFTLRARGVC YAHTLPCSIP AHNPDLAQEY 120 LGALVKTWPD TRRPLNPPHA TPTTSPSSRR RQQSARKILL GRKHDPPRRP RARLSVSRPN 180 PFSYHFTSQI SHRPVRAARA RAWRQRVITS FSVRAEREKR VGTGGSRRRR PMGRAPCCDK 240 KQGLTKGPWT PEEDKLLVDY IQANGHGSWR LLPKLAGLLD LKSFQYALLF VPLCGRSVSE 300 FRGSA

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5409	31	57