PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05872.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GATA

Protein Properties

Length: 412aa MW: 43941.1 Da PI: 8.3515

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05872.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	60.1	2.7e-19	332	366	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l Zmw_sc05872.1.g00020.1.am.mk 332 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 366 *******************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50114	12.057	326	362	IPR000679	Zinc finger, GATA-type
SMART	SM00401	6.2E-18	326	380	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	3.23E-14	329	389	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.9E-15	330	364	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	3.87E-15	331	388	No hit	No description
PROSITE pattern	PS00344	0	332	357	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	2.9E-17	332	366	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MTHQPISSSP PFPLLPSHFL HAPLAFPFHP LIFFFSLRLL LSAAAPAMAL FVAQHHGSLL 60 EREGRMDALR SSLRPCEAAE EVPTAAAWGA GDRGVGLFGE GFAVEDLLDL EELCEVEKDG 120 EAAPSPAVDE DKSSDSHGSS SVVSYELMPP PPPVIDLPAH DAEELEWVSR IMDDSLAELP 180 PAPHLPAASF ALRRQPEPAV PRMVPVATPT ICALSTEALV PVKAKRSKRS RGSVWSLSGA 240 APLSDSTSSS STSATSSCSS SSVSFPQLLL LDSSPFAASH LLEQAPRSKK LKHGKHGKSK 300 PKKRGRKPKH QPAAQFLGSD ASAQTPPGDR RCSHCGVQKT PQWRAGPEGA KTLCNACGVR 360 YKSGRLLPEY RPACSPTFVS GVHSNSHRKV LEMRRKEGLL VPAAIAPAVA SF

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MTHQPISSSP PFPLLPSHFL HAPLAFPFHP LIFFFSLRLL LSAAAPAMAL FVAQHHGSLL  60
EREGRMDALR SSLRPCEAAE EVPTAAAWGA GDRGVGLFGE GFAVEDLLDL EELCEVEKDG  120
EAAPSPAVDE DKSSDSHGSS SVVSYELMPP PPPVIDLPAH DAEELEWVSR IMDDSLAELP  180
PAPHLPAASF ALRRQPEPAV PRMVPVATPT ICALSTEALV PVKAKRSKRS RGSVWSLSGA  240
APLSDSTSSS STSATSSCSS SSVSFPQLLL LDSSPFAASH LLEQAPRSKK LKHGKHGKSK  300
PKKRGRKPKH QPAAQFLGSD ASAQTPPGDR RCSHCGVQKT PQWRAGPEGA KTLCNACGVR  360
YKSGRLLPEY RPACSPTFVS GVHSNSHRKV LEMRRKEGLL VPAAIAPAVA SF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025798828.1	1e-134	GATA transcription factor 6-like
TrEMBL	A0A2T7F9Q4	1e-134	A0A2T7F9Q4_9POAL; Uncharacterized protein
STRING	Pavir.Ab02582.1.p	1e-134	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1417	33	108