PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05831.1.g00030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 76aa    MW: 7899.86 Da    PI: 5.7042
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05831.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA40.53.7e-131251135
                            GATA 11 lWRrgpdgnktLCnaCGlyyrkkgl 35
                                    ++Rrgpdg++tLCnaCGl+++ kgl
  Zmw_sc05831.1.g00030.1.am.mkhc  1 MMRRGPDGPRTLCNACGLMWANKGL 25
                                    68********************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.105.8E-11130IPR013088Zinc finger, NHR/GATA-type
SMARTSM004010.0027136IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.735139IPR000679Zinc finger, GATA-type
PfamPF003203.8E-11125IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.66E-8141No hitNo description
CDDcd002021.47E-10231No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MMRRGPDGPR TLCNACGLMW ANKGLLRDLS KSPQVVQSTP AVDDGQNGGV TQVVVAPGAE  60
QENPAPATTN GHELST
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966123.16e-30GATA transcription factor 20 isoform X1
SwissprotQ5Z4U53e-26GAT20_ORYSJ; GATA transcription factor 20
TrEMBLK3XXU21e-28K3XXU2_SETIT; Uncharacterized protein
STRINGSi006750m2e-29(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773